Transformer architecture and attention mechanisms in genome data analysis: a comprehensive review
SR Choi, M Lee - Biology, 2023 - mdpi.com
Simple Summary The rapidly advancing field of deep learning, specifically transformer-
based architectures and attention mechanisms, has found substantial applicability in …
based architectures and attention mechanisms, has found substantial applicability in …
Accurately identifying hemagglutinin using sequence information and machine learning methods
Introduction Hemagglutinin (HA) is responsible for facilitating viral entry and infection by
promoting the fusion between the host membrane and the virus. Given its significance in the …
promoting the fusion between the host membrane and the virus. Given its significance in the …
A first computational frame for recognizing heparin-binding protein
W Zhu, SS Yuan, J Li, CB Huang, H Lin, B Liao - Diagnostics, 2023 - mdpi.com
Heparin-binding protein (HBP) is a cationic antibacterial protein derived from multinuclear
neutrophils and an important biomarker of infectious diseases. The correct identification of …
neutrophils and an important biomarker of infectious diseases. The correct identification of …
Advances in the roles and mechanisms of mesenchymal stem cell derived microRNAs on periodontal tissue regeneration
J Zhang, L Chen, J Yu, W Tian, S Guo - Stem Cell Research & Therapy, 2024 - Springer
Periodontitis is one of the most prevalent oral diseases leading to tooth loss in adults, and is
characterized by the destruction of periodontal supporting structures. Traditional therapies …
characterized by the destruction of periodontal supporting structures. Traditional therapies …
H2Opred: a robust and efficient hybrid deep learning model for predicting 2'-O-methylation sites in human RNA
O-methylation (2OM) is the most common post-transcriptional modification of RNA. It plays a
crucial role in RNA splicing, RNA stability and innate immunity. Despite advances in high …
crucial role in RNA splicing, RNA stability and innate immunity. Despite advances in high …
Advancing the accuracy of SARS-CoV-2 phosphorylation site detection via meta-learning approach
The worldwide appearance of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-
2) has generated significant concern and posed a considerable challenge to global health …
2) has generated significant concern and posed a considerable challenge to global health …
iPADD: a computational tool for predicting potential antidiabetic drugs using machine learning algorithms
XW Liu, TY Shi, D Gao, CY Ma, H Lin… - Journal of Chemical …, 2023 - ACS Publications
Diabetes mellitus is a chronic metabolic disease, which causes an imbalance in blood
glucose homeostasis and further leads to severe complications. With the increasing …
glucose homeostasis and further leads to severe complications. With the increasing …
DeepLocRNA: an interpretable deep learning model for predicting RNA subcellular localization with domain-specific transfer-learning
Motivation Accurate prediction of RNA subcellular localization plays an important role in
understanding cellular processes and functions. Although post-transcriptional processes are …
understanding cellular processes and functions. Although post-transcriptional processes are …
i2OM: Toward a better prediction of 2′-O-methylation in human RNA
YH Yang, CY Ma, D Gao, XW Liu, SS Yuan… - International Journal of …, 2023 - Elsevier
O-methylation (2OM) is an omnipresent post-transcriptional modification in RNAs. It is
important for the regulation of RNA stability, mRNA splicing and translation, as well as innate …
important for the regulation of RNA stability, mRNA splicing and translation, as well as innate …
GeneAI 3.0: powerful, novel, generalized hybrid and ensemble deep learning frameworks for miRNA species classification of stationary patterns from nucleotides
Due to the intricate relationship between the small non-coding ribonucleic acid (miRNA)
sequences, the classification of miRNA species, namely Human, Gorilla, Rat, and Mouse is …
sequences, the classification of miRNA species, namely Human, Gorilla, Rat, and Mouse is …