Freshwater and soil foraminifera–a story of long-forgotten relatives

M Holzmann, AJ Gooday… - Journal of …, 2021 - pubs.geoscienceworld.org
Foraminifera are a primarily marine taxon widespread in all oceanic habitats, from shallow,
brackish-water settings to deep-seafloor and pelagic realms. Their diversity is remarkable …

Opportunities and challenges in incorporating benthic foraminifera in marine and coastal environmental biomonitoring of soft sediments: from science to regulation …

SHM Sousa, C Yamashita, DL Semensatto… - Journal of Sedimentary …, 2020 - Springer
Scientific studies have demonstrated the usefulness of benthic foraminifera as bioindicators
to assess the health of marine, coastal, and transitional ecosystems. Similar to macrofauna …

Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life

F Rimet, E Aylagas, A Borja, A Bouchez, A Canino… - 2021 - repository.kaust.edu.sa
DNA barcoding and metabarcoding is increasingly used to effectively and precisely assess
and monitor biodiversity in aquatic ecosystems. As these methods rely on data availability …

Mitochondrial cytochrome c oxidase subunit I (COI) metabarcoding of Foraminifera communities using taxon-specific primers

JN Macher, DM Bloska, M Holzmann, EB Girard… - PeerJ, 2022 - peerj.com
Foraminifera are a species-rich phylum of rhizarian protists that are highly abundant in most
marine environments. Molecular methods such as metabarcoding have revealed a high, yet …

[HTML][HTML] Taxon-rich transcriptomics supports higher-level phylogeny and major evolutionary trends in Foraminifera

R Sierra, F Mauffrey, J Cruz, M Holzmann… - Molecular Phylogenetics …, 2022 - Elsevier
Foraminifera, classified in the supergroup Rhizaria, are a common and highly diverse group
of mainly marine protists. Despite their evolutionary and ecological importance, only limited …

When ecological transitions are not so infrequent: independent colonizations of athalassohaline water bodies by Arcellidae (Arcellinida; Amoebozoa), with …

F Useros, R González-Miguéns… - FEMS Microbiology …, 2023 - academic.oup.com
The salinity and humidity barriers divide biodiversity and strongly influence the distribution of
organisms. Crossing them opens the possibility for organisms to colonize new niches and …

Broad sampling of monothalamids (Rhizaria, Foraminifera) gives further insight into diversity of non-marine Foraminifera

F Siemensma, M Holzmann… - European journal of …, 2021 - Elsevier
Non-marine foraminifera are among the least known groups of protists and only a handful of
species have been described since the 19th century. We collected one naked and five …

High diversity and abundance of Foraminifera associated with Mediterranean benthic red algae mats

FI Rossbach, B Merk, C Wild - Diversity, 2021 - mdpi.com
The Mediterranean Sea comprises habitats such as Posidonia oceanica seagrass meadows
that exhibit high associated biodiversity of sessile organisms. Recent pilot research …

[HTML][HTML] Novel contributions to the molecular and morphological diversity of freshwater monothalamid foraminifera: Description of six new species

F Siemensma, M Holzmann - European Journal of Protistology, 2023 - Elsevier
Non-marine monothalamous foraminifera are common in freshwater and soil habitats. They
comprise a poorly-known group lacking sufficient information about diversity, morphology …

COI metabarcoding of large benthic Foraminifera: Method validation for application in ecological studies

EB Girard, JN Macher, J Jompa… - Ecology and …, 2022 - Wiley Online Library
Monitoring community composition of Foraminifera (single‐celled marine protists) provides
valuable insights into environmental conditions in marine ecosystems. Despite the efficiency …