DNA sequencing at 40: past, present and future
This review commemorates the 40th anniversary of DNA sequencing, a period in which we
have already witnessed multiple technological revolutions and a growth in scale from a few …
have already witnessed multiple technological revolutions and a growth in scale from a few …
Piercing the dark matter: bioinformatics of long-range sequencing and map**
Several new genomics technologies have become available that offer long-read sequencing
or long-range map** with higher throughput and higher resolution analysis than ever …
or long-range map** with higher throughput and higher resolution analysis than ever …
A reference genome for pea provides insight into legume genome evolution
We report the first annotated chromosome-level reference genome assembly for pea, Gregor
Mendel's original genetic model. Phylogenetics and paleogenomics show genomic …
Mendel's original genetic model. Phylogenetics and paleogenomics show genomic …
Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits
INTRODUCTION The ruminants are one of the most successful mammalian lineages,
exhibiting extensive morphological and ecological diversity and containing several key …
exhibiting extensive morphological and ecological diversity and containing several key …
The unique gut microbiome of giant pandas involved in protein metabolism contributes to the host's dietary adaption to bamboo
F Deng, C Wang, D Li, Y Peng, L Deng, Y Zhao… - Microbiome, 2023 - Springer
Background The gut microbiota of the giant panda (Ailuropoda melanoleuca), a global
symbol of conservation, are believed to be involved in the host's dietary switch to a fibrous …
symbol of conservation, are believed to be involved in the host's dietary switch to a fibrous …
Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution
Gossypium hirsutum has proven difficult to sequence owing to its complex allotetraploid
(AtDt) genome. Here we produce a draft genome using 181-fold paired-end sequences …
(AtDt) genome. Here we produce a draft genome using 181-fold paired-end sequences …
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes
Whole-genome sequences are now available for many microbial species and clades,
however existing whole-genome alignment methods are limited in their ability to perform …
however existing whole-genome alignment methods are limited in their ability to perform …
[HTML][HTML] SMARTdenovo: a de novo assembler using long noisy reads
H Liu, S Wu, A Li, J Ruan - Gigabyte, 2021 - ncbi.nlm.nih.gov
Long-read single-molecule sequencing has revolutionized de novo genome assembly and
enabled the automated reconstruction of reference-quality genomes. It has also been widely …
enabled the automated reconstruction of reference-quality genomes. It has also been widely …
Sequencing depth and coverage: key considerations in genomic analyses
Sequencing technologies have placed a wide range of genomic analyses within the
capabilities of many laboratories. However, sequencing costs often set limits to the amount …
capabilities of many laboratories. However, sequencing costs often set limits to the amount …
The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels
Vertebrate gut microbiome often underpins the metabolic capability and provides many
beneficial effects on their hosts. However, little was known about how host trophic level …
beneficial effects on their hosts. However, little was known about how host trophic level …