Metagenomic applications in microbial diversity, bioremediation, pollution monitoring, enzyme and drug discovery. A review

S Datta, KN Rajnish, MS Samuel… - Environmental …, 2020 - Springer
Metagenomics is a technology employed to study genetic material directly isolated from
environmental samples. Metagenomics thus reveals knowledge on microbial communities of …

Building upon current knowledge and techniques of indoor microbiology to construct the next era of theory into microorganisms, health, and the built environment

PF Horve, S Lloyd, GA Mhuireach, L Dietz… - Journal of exposure …, 2020 - nature.com
In the constructed habitat in which we spend up to 90% of our time, architectural design
influences occupants' behavioral patterns, interactions with objects, surfaces, rituals, the …

A few Ascomycota taxa dominate soil fungal communities worldwide

E Egidi, M Delgado-Baquerizo, JM Plett, J Wang… - Nature …, 2019 - nature.com
Despite having key functions in terrestrial ecosystems, information on the dominant soil fungi
and their ecological preferences at the global scale is lacking. To fill this knowledge gap, we …

Identification of prosthetic joint infection pathogens using a shotgun metagenomics approach

MJ Thoendel, PR Jeraldo… - Clinical Infectious …, 2018 - academic.oup.com
Background Metagenomic shotgun sequencing has the potential to change how many
infections, particularly those caused by difficult-to-culture organisms, are diagnosed …

Airborne environmental DNA metabarcoding for the monitoring of terrestrial insects—A proof of concept from the field

F Roger, HR Ghanavi, N Danielsson… - Environmental …, 2022 - Wiley Online Library
Biodiversity is in decline due to human‐induced pressures on ecosystems around the world.
To be able to counteract this alarming trend, it is paramount to closely monitor biodiversity at …

Geospatial resolution of human and bacterial diversity with city-scale metagenomics

E Afshinnekoo, C Meydan, S Chowdhury, D Jaroudi… - Cell systems, 2015 - cell.com
The panoply of microorganisms and other species present in our environment influence
human health and disease, especially in cities, but have not been profiled with …

Fungal communities decline with urbanization—more in air than in soil

N Abrego, B Crosier, P Somervuo, N Ivanova… - The ISME …, 2020 - academic.oup.com
Increasing evidence suggests that degradation of biodiversity in human populated areas is a
threat for the ecosystem processes that are relevant for human well-being. Fungi are a …

Airborne environmental DNA metabarcoding detects more diversity, with less sampling effort, than a traditional plant community survey

MD Johnson, M Fokar, RD Cox, MA Barnes - BMC Ecology and Evolution, 2021 - Springer
Abstract Background Airborne environmental DNA (eDNA) research is an emerging field
that focuses on the detection of species from their genetic remnants in the air. The majority of …

Challenges and opportunities of airborne metagenomics

H Behzad, T Gojobori, K Mineta - Genome biology and evolution, 2015 - academic.oup.com
Recent metagenomic studies of environments, such as marine and soil, have significantly
enhanced our understanding of the diverse microbial communities living in these habitats …

Metatranscriptomic exploration of microbial functioning in clouds

P Amato, L Besaury, M Joly, B Penaud… - Scientific Reports, 2019 - nature.com
Clouds constitute the uppermost layer of the biosphere. They host diverse communities
whose functioning remains obscure, although biological activity potentially participates to …