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Physics of base-pairing dynamics in DNA
As a key molecule of life, Deoxyribo-Nucleic Acid (DNA) is the focus of numbers of
investigations with the help of biological, chemical and physical techniques. From a physical …
investigations with the help of biological, chemical and physical techniques. From a physical …
Nonlinear dynamics and statistical physics of DNA
M Peyrard - Nonlinearity, 2004 - iopscience.iop.org
DNA is not only an essential object of study for biologists—it also raises very interesting
questions for physicists. This paper discuss its nonlinear dynamics, its statistical mechanics …
questions for physicists. This paper discuss its nonlinear dynamics, its statistical mechanics …
Ideas and methods of nonlinear mathematics and theoretical physics in DNA science: the McLaughlin-Scott equation and its application to study the DNA open state …
LV Yakushevich, LA Krasnobaeva - Biophysical Reviews, 2021 - Springer
The review is devoted to a new and rapidly develo** area related to the application of
ideas and methods of nonlinear mathematics and theoretical physics to study the internal …
ideas and methods of nonlinear mathematics and theoretical physics to study the internal …
The incipient denaturation mechanism of DNA
M Xu, T Dai, Y Wang, G Yang - RSC advances, 2022 - pubs.rsc.org
DNA denaturation is related to many important biological phenomena, such as its
replication, transcription and the interaction with some specific proteins for single-stranded …
replication, transcription and the interaction with some specific proteins for single-stranded …
A predictive model for the thermomechanical melting transition of double stranded DNA
By extending the classical Peyrard–Bishop model, we are able to obtain a fully analytical
description for the mechanical response of DNA under stretching at variable values of …
description for the mechanical response of DNA under stretching at variable values of …
A review on nonlinear DNA physics
The study and the investigation of structural and dynamical properties of complex systems
have attracted considerable interest among scientists in general and physicists and …
have attracted considerable interest among scientists in general and physicists and …
Modelling DNA at the mesoscale: a challenge for nonlinear science?
M Peyrard, S Cuesta-López, G James - Nonlinearity, 2008 - iopscience.iop.org
When it is viewed at the scale of a base pair, DNA appears as a nonlinear lattice. Modelling
its properties is a fascinating goal. The detailed experiments that can be performed on this …
its properties is a fascinating goal. The detailed experiments that can be performed on this …
Thermodynamics of twisted DNA with solvent interaction
M Zoli - The Journal of chemical physics, 2011 - pubs.aip.org
The imaginary time path integral formalism is applied to a nonlinear Hamiltonian for a short
fragment of heterogeneous DNA with a stabilizing solvent interaction term. Torsional effects …
fragment of heterogeneous DNA with a stabilizing solvent interaction term. Torsional effects …
The pathway of oligomeric DNA melting investigated by molecular dynamics simulations
KY Wong, BM Pettitt - Biophysical journal, 2008 - cell.com
Details of the reaction coordinate for DNA melting are fundamental to much of biology and
biotechnology. Recently, it has been shown experimentally that there are at least three …
biotechnology. Recently, it has been shown experimentally that there are at least three …
[HTML][HTML] On the thermodynamics of DNA double strand in the Peyrard-Bishop-Dauxois model
IV Likhachev, AS Shigaev, VD Lakhno - Physics Letters A, 2024 - Elsevier
The temperature dependence of energy, partition function, entropy and free energy,
describing a first-order-like phase transition of a DNA molecule is calculated based on the …
describing a first-order-like phase transition of a DNA molecule is calculated based on the …