Physics of base-pairing dynamics in DNA

M Manghi, N Destainville - Physics Reports, 2016 - Elsevier
As a key molecule of life, Deoxyribo-Nucleic Acid (DNA) is the focus of numbers of
investigations with the help of biological, chemical and physical techniques. From a physical …

Nonlinear dynamics and statistical physics of DNA

M Peyrard - Nonlinearity, 2004 - iopscience.iop.org
DNA is not only an essential object of study for biologists—it also raises very interesting
questions for physicists. This paper discuss its nonlinear dynamics, its statistical mechanics …

Ideas and methods of nonlinear mathematics and theoretical physics in DNA science: the McLaughlin-Scott equation and its application to study the DNA open state …

LV Yakushevich, LA Krasnobaeva - Biophysical Reviews, 2021 - Springer
The review is devoted to a new and rapidly develo** area related to the application of
ideas and methods of nonlinear mathematics and theoretical physics to study the internal …

The incipient denaturation mechanism of DNA

M Xu, T Dai, Y Wang, G Yang - RSC advances, 2022 - pubs.rsc.org
DNA denaturation is related to many important biological phenomena, such as its
replication, transcription and the interaction with some specific proteins for single-stranded …

A predictive model for the thermomechanical melting transition of double stranded DNA

G Florio, G Puglisi - Acta Biomaterialia, 2023 - Elsevier
By extending the classical Peyrard–Bishop model, we are able to obtain a fully analytical
description for the mechanical response of DNA under stretching at variable values of …

A review on nonlinear DNA physics

D Chevizovich, D Michieletto… - Royal Society …, 2020 - royalsocietypublishing.org
The study and the investigation of structural and dynamical properties of complex systems
have attracted considerable interest among scientists in general and physicists and …

Modelling DNA at the mesoscale: a challenge for nonlinear science?

M Peyrard, S Cuesta-López, G James - Nonlinearity, 2008 - iopscience.iop.org
When it is viewed at the scale of a base pair, DNA appears as a nonlinear lattice. Modelling
its properties is a fascinating goal. The detailed experiments that can be performed on this …

Thermodynamics of twisted DNA with solvent interaction

M Zoli - The Journal of chemical physics, 2011 - pubs.aip.org
The imaginary time path integral formalism is applied to a nonlinear Hamiltonian for a short
fragment of heterogeneous DNA with a stabilizing solvent interaction term. Torsional effects …

The pathway of oligomeric DNA melting investigated by molecular dynamics simulations

KY Wong, BM Pettitt - Biophysical journal, 2008 - cell.com
Details of the reaction coordinate for DNA melting are fundamental to much of biology and
biotechnology. Recently, it has been shown experimentally that there are at least three …

[HTML][HTML] On the thermodynamics of DNA double strand in the Peyrard-Bishop-Dauxois model

IV Likhachev, AS Shigaev, VD Lakhno - Physics Letters A, 2024 - Elsevier
The temperature dependence of energy, partition function, entropy and free energy,
describing a first-order-like phase transition of a DNA molecule is calculated based on the …