Survey for a Decade of Coding for DNA Storage

O Sabary, HM Kiah, PH Siegel… - IEEE Transactions on …, 2024 - ieeexplore.ieee.org
Advancements in DNA synthesis and sequencing technologies have enabled the storage of
data on synthetic DNA strands. However, realizing its potential relies on the design of …

Storing Images in DNA via base128 Encoding

K Wang, B Cao, T Ma, Y Zhao, Y Zheng… - Journal of Chemical …, 2024 - ACS Publications
Current DNA storage schemes lack flexibility and consistency in processing highly
redundant and correlated image data, resulting in low sequence stability and image …

A tutorial on coding methods for DNA-based molecular communications and storage

L **ang, Q Liu, S Chen, K Yan, W Wu… - IEEE Internet of Things …, 2023 - ieeexplore.ieee.org
The exponential increase of data has motivated advances of data storage technologies. As a
promising storage media, deoxyribonucleic acid (DNA) storage provides a much higher data …

Design of constraint coding sets for archive DNA storage

Q Yin, Y Zheng, B Wang… - IEEE/ACM transactions on …, 2021 - ieeexplore.ieee.org
With the advent of the era of massive data, the increase of storage demand has far
exceeded current storage capacity. DNA molecules provide a reliable solution for big data …

Study of the error correction capability of multiple sequence alignment algorithm (MAFFT) in DNA storage

R **e, X Zan, L Chu, Y Su, P Xu, W Liu - BMC bioinformatics, 2023 - Springer
Synchronization (insertions–deletions) errors are still a major challenge for reliable
information retrieval in DNA storage. Unlike traditional error correction codes (ECC) that add …

An intelligent optimization algorithm for constructing a DNA storage code: NOL-HHO

Q Yin, B Cao, X Li, B Wang, Q Zhang, X Wei - International journal of …, 2020 - mdpi.com
The high density, large capacity, and long-term stability of DNA molecules make them an
emerging storage medium that is especially suitable for the long-term storage of large …

Channel model and decoder with memory for DNA data storage with nanopore sequencing

B Hamoum, E Dupraz - IEEE Access, 2023 - ieeexplore.ieee.org
This paper investigates channel coding for DNA data storage, a recent and emerging
paradigm in which both substitution errors and synchronization errors (insertions, deletions) …

Iterative coding scheme satisfying GC balance and run-length constraints for DNA storage with robustness to error propagation

SJ Park, Y Lee, JS No - Journal of Communications and …, 2022 - ieeexplore.ieee.org
In this paper, we propose a novel iterative encoding algorithm for DNA storage to satisfy
both the GC balance and run-length constraints using a greedy algorithm. DNA strands with …

Evolutionary approach to construct robust codes for DNA-based data storage

A Rasool, Q Jiang, Y Wang, X Huang, Q Qu… - Frontiers in …, 2023 - frontiersin.org
DNA is a practical storage medium with high density, durability, and capacity to
accommodate exponentially growing data volumes. A DNA sequence structure is a …

A robust and efficient DNA storage architecture based on modulation encoding and decoding

X Zan, R **e, X Yao, P Xu, W Liu - Journal of Chemical Information …, 2023 - ACS Publications
Synthetic DNA has been widely considered an attractive medium for digital data storage.
However, the random insertion–deletion–substitution (IDS) errors in the sequenced reads …