Between neurons and networks: investigating mesoscale brain connectivity in neurological and psychiatric disorders

AC Caznok Silveira, ASLM Antunes… - Frontiers in …, 2024 - frontiersin.org
The study of brain connectivity has been a cornerstone in understanding the complexities of
neurological and psychiatric disorders. It has provided invaluable insights into the functional …

Computational tools for neuronal morphometric analysis: a systematic search and review

J Leite, F Nhoatto, A Jacob Jr, R Santana, F Lobato - Neuroinformatics, 2024 - Springer
Morphometry is fundamental for studying and correlating neuronal morphology with brain
functions. With increasing computational power, it is possible to extract morphometric …

[HTML][HTML] CAVE: Connectome annotation versioning engine

S Dorkenwald, CM Schneider-Mizell, D Brittain… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Abstract Advances in Electron Microscopy, image segmentation and computational
infrastructure have given rise to large-scale and richly annotated connectomic datasets …

Vimo-Visual Analysis of Neuronal Connectivity Motifs

J Troidl, S Warchol, J Choi, J Matelsky… - IEEE transactions on …, 2023 - ieeexplore.ieee.org
Recent advances in high-resolution connectomics provide researchers with access to
accurate petascale reconstructions of neuronal circuits and brain networks for the first time …

A visual interface for exploring hypotheses about neural circuits

SK Vohra, P Harth, Y Isoe, A Bahl… - … on Visualization and …, 2023 - ieeexplore.ieee.org
One of the fundamental problems in neurobiological research is to understand how neural
circuits generate behaviors in response to sensory stimuli. Elucidating such neural circuits …

Igneous: Distributed dense 3D segmentation meshing, neuron skeletonization, and hierarchical downsampling

W Silversmith, A Zlateski, JA Bae, I Tartavull… - Frontiers in neural …, 2022 - frontiersin.org
Three-dimensional electron microscopy images of brain tissue and their dense
segmentations are now petascale and growing. These volumes require the mass production …

Efficient and Accurate Semi-automatic Neuron Tracing with Extended Reality

J Chen, Z Yuan, J **, Z Gao, Y Li, X Zhu… - … on Visualization and …, 2024 - ieeexplore.ieee.org
Neuron tracing, alternately referred to as neuron reconstruction, is the procedure for
extracting the digital representation of the three-dimensional neuronal morphology from …

NeuroVerse: Immersive exploration of 3D ultrastructural brain reconstructions for education and collaborative analysis

C Calì, M Agus - Proceedings of the 29th International ACM Conference …, 2024 - dl.acm.org
We introduce NeuroVerse, a framework designed to support the immersive exploration of 3D
nanometric-scale reconstructions of structural and ultrastructural neural or glial cellular …

Leveraging Self-Supervised Vision Transformers for Segmentation-based Transfer Function Design

D Engel, L Sick, T Ropinski - IEEE Transactions on …, 2024 - ieeexplore.ieee.org
In volume rendering, transfer functions are used to classify structures of interest, and to
assign optical properties such as color and opacity. They are commonly defined as 1D or 2D …

Learning to Correct Sloppy Annotations in Electron Microscopy Volumes

M Chen, MB Renuka, L Mi, J Lichtman… - Proceedings of the …, 2023 - openaccess.thecvf.com
Connectomics deals with the problem of reconstructing neural circuitry from electron
microscopy images at the synaptic level. Automatically reconstructing circuits from these …