SARS-CoV-2 variants and clinical outcomes: a systematic review

IR Mendiola-Pastrana, E Lopez-Ortiz… - Life, 2022 - mdpi.com
Background: From the start of the COVID-19 pandemic, new SARS-CoV-2 variants have
emerged that potentially affect transmissibility, severity, and immune evasion in infected …

SARS-CoV-2 spike-protein D614G mutation increases virion spike density and infectivity

L Zhang, CB Jackson, H Mou, A Ojha, H Peng… - Nature …, 2020 - nature.com
SARS-CoV-2 variants with spike (S)-protein D614G mutations now predominate globally.
We therefore compare the properties of the mutated S protein (SG614) with the original …

Antigenic characterization of influenza and SARS-CoV-2 viruses

Y Wang, CY Tang, XF Wan - Analytical and bioanalytical chemistry, 2022 - Springer
Antigenic characterization of emerging and re-emerging viruses is necessary for the
prevention of and response to outbreaks, evaluation of infection mechanisms …

[HTML][HTML] Underdetected dispersal and extensive local transmission drove the 2022 mpox epidemic

MI Paredes, N Ahmed, M Figgins, V Colizza, P Lemey… - Cell, 2024 - cell.com
Summary The World Health Organization declared mpox a public health emergency of
international concern in July 2022. To investigate global mpox transmission and population …

[HTML][HTML] Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity

EC Thomson, LE Rosen, JG Shepherd, R Spreafico… - Cell, 2021 - cell.com
SARS-CoV-2 can mutate and evade immunity, with consequences for efficacy of emerging
vaccines and antibody therapeutics. Here, we demonstrate that the immunodominant SARS …

Repeated mRNA vaccination sequentially boosts SARS-CoV-2-specific CD8+ T cells in persons with previous COVID-19

ES Ford, K Mayer-Blackwell, L **g, KJ Laing… - Nature …, 2024 - nature.com
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) hybrid immunity is more
protective than vaccination or previous infection alone. To investigate the kinetics of spike …

IgM antibodies derived from memory B cells are potent cross-variant neutralizers of SARS-CoV-2

M Hale, J Netland, Y Chen, CD Thouvenel… - Journal of Experimental …, 2022 - rupress.org
Humoral immunity to SARS-CoV-2 can be supplemented with polyclonal sera from
convalescent donors or an engineered monoclonal antibody (mAb) product. While …

A SARS-CoV-2 variant elicits an antibody response with a shifted immunodominance hierarchy

AJ Greaney, TN Starr, RT Eguia, AN Loes… - PLoS …, 2022 - journals.plos.org
Many SARS-CoV-2 variants have mutations at key sites targeted by antibodies. However, it
is unknown if antibodies elicited by infection with these variants target the same or different …

Estimating the reproduction number and transmission heterogeneity from the size distribution of clusters of identical pathogen sequences

C Tran-Kiem, T Bedford - Proceedings of the National Academy of …, 2024 - pnas.org
Quantifying transmission intensity and heterogeneity is crucial to ascertain the threat posed
by infectious diseases and inform the design of interventions. Methods that jointly estimate …

Impact and mitigation of sampling bias to determine viral spread: Evaluating discrete phylogeography through CTMC modeling and structured coalescent model …

M Layan, NF Müller, S Dellicour, N De Maio… - Virus …, 2023 - academic.oup.com
Bayesian phylogeographic inference is a powerful tool in molecular epidemiological studies,
which enables reconstruction of the origin and subsequent geographic spread of pathogens …