Mass-spectrometric exploration of proteome structure and function

R Aebersold, M Mann - Nature, 2016 - nature.com
Numerous biological processes are concurrently and coordinately active in every living cell.
Each of them encompasses synthetic, catalytic and regulatory functions that are, almost …

Cancer proteogenomics: current impact and future prospects

DR Mani, K Krug, B Zhang, S Satpathy… - Nature Reviews …, 2022 - nature.com
Genomic analyses in cancer have been enormously impactful, leading to the identification of
driver mutations and development of targeted therapies. But the functions of the vast majority …

Actin cytoskeleton vulnerability to disulfide stress mediates disulfidptosis

X Liu, L Nie, Y Zhang, Y Yan, C Wang, M Colic… - Nature cell …, 2023 - nature.com
SLC7A11-mediated cystine uptake suppresses ferroptosis yet promotes cell death under
glucose starvation; the nature of the latter cell death remains unknown. Here we show that …

Carbon-negative production of acetone and isopropanol by gas fermentation at industrial pilot scale

FE Liew, R Nogle, T Abdalla, BJ Rasor, C Canter… - Nature …, 2022 - nature.com
Many industrial chemicals that are produced from fossil resources could be manufactured
more sustainably through fermentation. Here we describe the development of a carbon …

A multi-organ chip with matured tissue niches linked by vascular flow

K Ronaldson-Bouchard, D Teles, K Yeager… - Nature Biomedical …, 2022 - nature.com
Engineered tissues can be used to model human pathophysiology and test the efficacy and
safety of drugs. Yet, to model whole-body physiology and systemic diseases, engineered …

Core mitochondrial genes are down-regulated during SARS-CoV-2 infection of rodent and human hosts

JW Guarnieri, JM Dybas, H Fazelinia, MS Kim… - Science translational …, 2023 - science.org
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) viral proteins bind to host
mitochondrial proteins, likely inhibiting oxidative phosphorylation (OXPHOS) and stimulating …

The MaxQuant computational platform for mass spectrometry-based shotgun proteomics

S Tyanova, T Temu, J Cox - Nature protocols, 2016 - nature.com
MaxQuant is one of the most frequently used platforms for mass-spectrometry (MS)-based
proteomics data analysis. Since its first release in 2008, it has grown substantially in …

Lysosome-targeting chimaeras for degradation of extracellular proteins

SM Banik, K Pedram, S Wisnovsky, G Ahn, NM Riley… - Nature, 2020 - nature.com
The majority of therapies that target individual proteins rely on specific activity-modulating
interactions with the target protein—for example, enzyme inhibition or ligand blocking …

diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition

F Meier, AD Brunner, M Frank, A Ha, I Bludau… - Nature …, 2020 - nature.com
Data-independent acquisition modes isolate and concurrently fragment populations of
different precursors by cycling through segments of a predefined precursor m/z range …

Papain-like protease regulates SARS-CoV-2 viral spread and innate immunity

D Shin, R Mukherjee, D Grewe, D Bojkova, K Baek… - Nature, 2020 - nature.com
The papain-like protease PLpro is an essential coronavirus enzyme that is required for
processing viral polyproteins to generate a functional replicase complex and enable viral …