Impacts of bioinformatics to medicinal chemistry

KC Chou - Medicinal chemistry, 2015 - ingentaconnect.com
Facing the explosive growth of biological sequence data, such as those of protein/peptide
and DNA/RNA, generated in the post-genomic age, many bioinformatical and mathematical …

An unprecedented revolution in medicinal chemistry driven by the progress of biological science

KC Chou - Current topics in medicinal chemistry, 2017 - benthamdirect.com
The eternal or ultimate goal of medicinal chemistry is to find most effective ways to treat
various diseases and extend human beings' life as long as possible. Human being is a …

iPromoter-2L: a two-layer predictor for identifying promoters and their types by multi-window-based PseKNC

B Liu, F Yang, DS Huang, KC Chou - Bioinformatics, 2018 - academic.oup.com
Motivation Being responsible for initiating transaction of a particular gene in genome,
promoter is a short region of DNA. Promoters have various types with different functions …

iACP: a sequence-based tool for identifying anticancer peptides

W Chen, H Ding, P Feng, H Lin, KC Chou - Oncotarget, 2016 - pmc.ncbi.nlm.nih.gov
Cancer remains a major killer worldwide. Traditional methods of cancer treatment are
expensive and have some deleterious side effects on normal cells. Fortunately, the …

Pseudo nucleotide composition or PseKNC: an effective formulation for analyzing genomic sequences

W Chen, H Lin, KC Chou - Molecular BioSystems, 2015 - pubs.rsc.org
With the avalanche of DNA/RNA sequences generated in the post-genomic age, it is urgent
to develop automated methods for analyzing the relationship between the sequences and …

2L-piRNA: a two-layer ensemble classifier for identifying piwi-interacting RNAs and their function

B Liu, F Yang, KC Chou - Molecular Therapy Nucleic Acids, 2017 - cell.com
Involved with important cellular or gene functions and implicated with many kinds of cancers,
piRNAs, or piwi-interacting RNAs, are of small non-coding RNA with around 19–33 nt in …

[HTML][HTML] Pse-in-One 2.0: an improved package of web servers for generating various modes of pseudo components of DNA, RNA, and protein sequences

B Liu, H Wu, KC Chou - Natural science, 2017 - scirp.org
Pse-in-One 2.0 is a package of web-servers evolved from Pse-in-One (Liu, B., Liu, F., Wang,
X., Chen, J. Fang, L. & Chou, KC Nucleic Acids Research, 2015, 43: W65-W71). In order to …

Predicting thermophilic proteins by machine learning

XF Wang, P Gao, YF Liu, HF Li, F Lu - Current Bioinformatics, 2020 - ingentaconnect.com
Background: Thermophilic proteins can maintain good activity under high temperature,
therefore, it is important to study thermophilic proteins for the thermal stability of proteins …

iPPI-Esml: an ensemble classifier for identifying the interactions of proteins by incorporating their physicochemical properties and wavelet transforms into PseAAC

J Jia, Z Liu, X **ao, B Liu, KC Chou - Journal of theoretical biology, 2015 - Elsevier
A cell contains thousands of proteins. Many important functions of cell are carried out
through the proteins therein. Proteins rarely function alone. Most of their functions essential …

iDNA-Methyl: Identifying DNA methylation sites via pseudo trinucleotide composition

Z Liu, X **ao, WR Qiu, KC Chou - Analytical biochemistry, 2015 - Elsevier
Predominantly occurring on cytosine, DNA methylation is a process by which cells can
modify their DNAs to change the expression of gene products. It plays very important roles in …