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Hijackers, hitchhikers, or co-drivers? The mysteries of mobilizable genetic elements
Mobile genetic elements shape microbial gene repertoires and populations. Recent results
reveal that many, possibly most, microbial mobile genetic elements require helpers to …
reveal that many, possibly most, microbial mobile genetic elements require helpers to …
[HTML][HTML] Plasmid classifications
Plasmids are universally present in bacteria and play key roles in the dissemination of
genes such as antibiotic resistance determinants. Major concepts in Plasmid Biology derive …
genes such as antibiotic resistance determinants. Major concepts in Plasmid Biology derive …
Identification of mobile genetic elements with geNomad
Identifying and characterizing mobile genetic elements in sequencing data is essential for
understanding their diversity, ecology, biotechnological applications and impact on public …
understanding their diversity, ecology, biotechnological applications and impact on public …
Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome
Large serine recombinases (LSRs) are DNA integrases that facilitate the site-specific
integration of mobile genetic elements into bacterial genomes. Only a few LSRs, such as …
integration of mobile genetic elements into bacterial genomes. Only a few LSRs, such as …
Population-level impacts of antibiotic usage on the human gut microbiome
The widespread usage of antimicrobials has driven the evolution of resistance in pathogenic
microbes, both increased prevalence of antimicrobial resistance genes (ARGs) and their …
microbes, both increased prevalence of antimicrobial resistance genes (ARGs) and their …
<? mode longmeta?> IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
Plasmids are mobile genetic elements found in many clades of Archaea and Bacteria. They
drive horizontal gene transfer, impacting ecological and evolutionary processes within …
drive horizontal gene transfer, impacting ecological and evolutionary processes within …
Phage–host coevolution in natural populations
Coevolution between bacteriophages (phages) and their bacterial hosts occurs through
changes in resistance and counter-resistance mechanisms. To assess phage–host …
changes in resistance and counter-resistance mechanisms. To assess phage–host …
The defense island repertoire of the Escherichia coli pan-genome
It has become clear in recent years that anti-phage defense systems cluster non-randomly
within bacterial genomes in so-called “defense islands”. Despite serving as a valuable tool …
within bacterial genomes in so-called “defense islands”. Despite serving as a valuable tool …
Bacteria have numerous distinctive groups of phage–plasmids with conserved phage and variable plasmid gene repertoires
Plasmids and temperate phages are key contributors to bacterial evolution. They are usually
regarded as very distinct. However, some elements, termed phage–plasmids, are known to …
regarded as very distinct. However, some elements, termed phage–plasmids, are known to …
Origins of transfer establish networks of functional dependencies for plasmid transfer by conjugation
Plasmids can be transferred between cells by conjugation, thereby driving bacterial
evolution by horizontal gene transfer. Yet, we ignore the molecular mechanisms of transfer …
evolution by horizontal gene transfer. Yet, we ignore the molecular mechanisms of transfer …