Efficient genome-editing tools to engineer the recalcitrant non-model industrial microorganism Zymomonas mobilis
G Binan, W Yalun, W **nyan, Y Yongfu, Z Peng… - Trends in …, 2024 - cell.com
Current biotechnology relies on a few well-studied model organisms, such as Escherichia
coli and Saccharomyces cerevisiae, for which abundant information and efficient toolkits are …
coli and Saccharomyces cerevisiae, for which abundant information and efficient toolkits are …
[HTML][HTML] Phage-assisted evolution and protein engineering yield compact, efficient prime editors
Prime editing enables a wide variety of precise genome edits in living cells. Here we use
protein evolution and engineering to generate prime editors with reduced size and improved …
protein evolution and engineering to generate prime editors with reduced size and improved …
Engineering bacteriophages for enhanced host range and efficacy: Insights from bacteriophage-bacteria interactions
HJ Jia, PP Jia, S Yin, LK Bu, G Yang… - Frontiers in Microbiology, 2023 - frontiersin.org
Bacteriophages, the most abundant organisms on earth, have the potential to address the
rise of multidrug-resistant bacteria resulting from the overuse of antibiotics. However, their …
rise of multidrug-resistant bacteria resulting from the overuse of antibiotics. However, their …
Retron-mediated multiplex genome editing and continuous evolution in Escherichia coli
W Liu, S Zuo, Y Shao, K Bi, J Zhao… - Nucleic Acids …, 2023 - academic.oup.com
While there are several genome editing techniques available, few are suitable for dynamic
and simultaneous mutagenesis of arbitrary targeted sequences in prokaryotes. Here, to …
and simultaneous mutagenesis of arbitrary targeted sequences in prokaryotes. Here, to …
An experimental census of retrons for DNA production and genome editing
Retrons are bacterial immune systems that use reverse-transcribed DNA (RT-DNA) to detect
phage infection. They are also deployed for genome editing, where they are modified so that …
phage infection. They are also deployed for genome editing, where they are modified so that …
DNA end sensing and cleavage by the Shedu anti-phage defense system
The detection of molecular patterns associated with invading pathogens is a hallmark of
innate immune systems. Prokaryotes deploy sophisticated host defense mechanisms in …
innate immune systems. Prokaryotes deploy sophisticated host defense mechanisms in …
Generation of DNAzyme in Bacterial Cells by a Bacterial Retron System
J Liu, L Cui, X Shi, J Yan, Y Wang, Y Ni, J He… - ACS Synthetic …, 2024 - ACS Publications
DNAzymes are catalytically active single-stranded DNAs in which DNAzyme 10–23 (Dz 10–
23) consists of a catalytic core and a substrate-binding arm that reduces gene expression …
23) consists of a catalytic core and a substrate-binding arm that reduces gene expression …
Landscape of new nuclease-containing antiphage systems in Escherichia coli and the counterdefense roles of bacteriophage T4 genome modifications
S Wang, E Sun, Y Liu, B Yin, X Zhang, M Li… - Journal of …, 2023 - Am Soc Microbiol
Many phages, such as T4, protect their genomes against the nucleases of bacterial
restriction-modification (RM) and CRISPR-Cas systems through covalent modification of …
restriction-modification (RM) and CRISPR-Cas systems through covalent modification of …
Retron-Eco1 assembles NAD+-hydrolyzing filaments that provide immunity against bacteriophages
Retrons are toxin-antitoxin systems protecting bacteria against bacteriophages via abortive
infection. The Retron-Eco1 antitoxin is formed by a reverse transcriptase (RT) and a non …
infection. The Retron-Eco1 antitoxin is formed by a reverse transcriptase (RT) and a non …
Enhancing Cellular and Enzymatic Properties Through In Vivo Continuous Evolution
W Chu, Y Guo, Y Wu, X Lv, J Li, L Liu, G Du… - …, 2024 - Wiley Online Library
Directed evolution seeks to evolve target genes at a rate far exceeding the natural mutation
rate, thereby endowing cellular and enzymatic properties with desired traits. In vivo …
rate, thereby endowing cellular and enzymatic properties with desired traits. In vivo …