Tumor evolution: Linear, branching, neutral or punctuated?

A Davis, R Gao, N Navin - Biochimica et Biophysica Acta (BBA)-Reviews …, 2017 - Elsevier
Intratumor heterogeneity has been widely reported in human cancers, but our knowledge of
how this genetic diversity emerges over time remains limited. A central challenge in studying …

Experimental evolution in biofilm populations

HP Steenackers, I Parijs, KR Foster… - FEMS microbiology …, 2016 - academic.oup.com
Biofilms are a major form of microbial life in which cells form dense surface associated
communities that can persist for many generations. The long-life of biofilm communities …

Biofilm antimicrobial susceptibility through an experimental evolutionary lens

T Coenye, M Bové, T Bjarnsholt - NPJ biofilms and microbiomes, 2022 - nature.com
Experimental evolution experiments in which bacterial populations are repeatedly exposed
to an antimicrobial treatment, and examination of the genotype and phenotype of the …

Controlling the speed and trajectory of evolution with counterdiabatic driving

S Iram, E Dolson, J Chiel, J Pelesko, N Krishnan… - Nature Physics, 2021 - nature.com
The pace and unpredictability of evolution are critically relevant in a variety of modern
challenges, such as combating drug resistance in pathogens and cancer, understanding …

Acceleration of evolutionary spread by long-range dispersal

O Hallatschek, DS Fisher - Proceedings of the National Academy of …, 2014 - pnas.org
The spreading of evolutionary novelties across populations is the central element of
adaptation. Unless populations are well mixed (like bacteria in a shaken test tube), the …

Mutational Pathway Determines Whether Drug Gradients Accelerate<? format?> Evolution of Drug-Resistant Cells

P Greulich, B Waclaw, RJ Allen - Physical review letters, 2012 - APS
Drug gradients are believed to play an important role in the evolution of bacteria resistant to
antibiotics and tumors resistant to anticancer drugs. We use a statistical physics model to …

Cutting through the complexity of cell collectives

CD Nadell, V Bucci, K Drescher… - … of the Royal …, 2013 - royalsocietypublishing.org
Via strength in numbers, groups of cells can influence their environments in ways that
individual cells cannot. Large-scale structural patterns and collective functions underpinning …

Limits to the rate of adaptive substitution in sexual populations

DB Weissman, NH Barton - PLoS genetics, 2012 - journals.plos.org
In large populations, many beneficial mutations may be simultaneously available and may
compete with one another, slowing adaptation. By finding the probability of fixation of a …

Cancer in light of experimental evolution

K Sprouffske, LMF Merlo, PJ Gerrish, CC Maley… - Current Biology, 2012 - cell.com
Cancer initiation, progression, and the emergence of therapeutic resistance are evolutionary
phenomena of clonal somatic cell populations. Studies in microbial experimental evolution …

Spatial structure increases the waiting time for cancer

EA Martens, R Kostadinov, CC Maley… - New journal of …, 2011 - iopscience.iop.org
Cancer results from a sequence of genetic and epigenetic changes that lead to a variety of
abnormal phenotypes including increased proliferation and survival of somatic cells and …