Rethinking drug design in the artificial intelligence era

P Schneider, WP Walters, AT Plowright… - Nature reviews drug …, 2020 - nature.com
Artificial intelligence (AI) tools are increasingly being applied in drug discovery. While some
protagonists point to vast opportunities potentially offered by such tools, others remain …

Unraveling the role of linker design in proteolysis targeting chimeras: Miniperspective

TA Bemis, JJ La Clair, MD Burkart - Journal of Medicinal …, 2021 - ACS Publications
A current bottleneck in the development of proteolysis targeting chimeras (PROTACs) is the
empirical nature of linker length structure–activity relationships (SARs). A multidisciplinary …

The IUPHAR/BPS Guide to PHARMACOLOGY in 2016: towards curated quantitative interactions between 1300 protein targets and 6000 ligands

C Southan, JL Sharman, HE Benson… - Nucleic acids …, 2016 - academic.oup.com
Abstract The IUPHAR/BPS Guide to PHARMACOLOGY (GtoPdb, http://www.
guidetopharmacology. org) provides expert-curated molecular interactions between …

Recent advances of SHP2 inhibitors in cancer therapy: current development and clinical application

X Yuan, H Bu, J Zhou, CY Yang… - Journal of medicinal …, 2020 - ACS Publications
SHP2 (Src homology-2 domain-containing protein tyrosine phosphatase-2) is a non-
receptor protein tyrosine phosphatase that removes tyrosine phosphorylation. Functionally …

Making sense of large-scale kinase inhibitor bioactivity data sets: a comparative and integrative analysis

J Tang, A Szwajda, S Shakyawar, T Xu… - Journal of Chemical …, 2014 - ACS Publications
We carried out a systematic evaluation of target selectivity profiles across three recent large-
scale biochemical assays of kinase inhibitors and further compared these standardized …

Fs-mol: A few-shot learning dataset of molecules

M Stanley, JF Bronskill, K Maziarz… - Thirty-fifth Conference …, 2021 - openreview.net
Small datasets are ubiquitous in drug discovery as data generation is expensive and can be
restricted for ethical reasons (eg in vivo experiments). A widely applied technique in early …

Active targeting drug delivery nanocarriers: Ligands

FS Anarjan - Nano-Structures & Nano-Objects, 2019 - Elsevier
There are two kinds of targeted drug delivery systems:(I) Active targeted drug delivery (smart
drug delivery) based on ligands affiliation to receptors,(II) Passive targeted drug delivery …

Trust, but verify II: a practical guide to chemogenomics data curation

D Fourches, E Muratov, A Tropsha - Journal of chemical …, 2016 - ACS Publications
There is a growing public concern about the lack of reproducibility of experimental data
published in peer-reviewed scientific literature. Herein, we review the most recent alerts …

Is target-based drug discovery efficient? Discovery and “off-target” mechanisms of all drugs

A Sadri - Journal of medicinal chemistry, 2023 - ACS Publications
Target-based drug discovery is the dominant paradigm of drug discovery; however, a
comprehensive evaluation of its real-world efficiency is lacking. Here, a manual systematic …

[HTML][HTML] Mechanistic enzymology in drug discovery: a fresh perspective

GA Holdgate, TD Meek, RL Grimley - Nature reviews Drug discovery, 2018 - nature.com
Given the therapeutic and commercial success of small-molecule enzyme inhibitors, as
exemplified by kinase inhibitors in oncology, a major focus of current drug-discovery and …