Non-coding RNAs in cancer: Platforms and strategies for investigating the genomic “dark matter”

K Grillone, C Riillo, F Scionti, R Rocca… - Journal of Experimental …, 2020 - Springer
The discovery of the role of non-coding RNAs (ncRNAs) in the onset and progression of
malignancies is a promising frontier of cancer genetics. It is clear that ncRNAs are …

Normalization methods for the analysis of unbalanced transcriptome data: a review

X Liu, N Li, S Liu, J Wang, N Zhang, X Zheng… - … in bioengineering and …, 2019 - frontiersin.org
Dozens of normalization methods for correcting experimental variation and bias in high-
throughput expression data have been developed during the last two decades. Up to 23 …

Hypoxia-related lncRNA correlates with prognosis and immune microenvironment in lower-grade glioma

S Xu, L Tang, Z Liu, C Luo, Q Cheng - Frontiers in Immunology, 2021 - frontiersin.org
Background Hypoxia-related genes are demonstrated to correlate with the prognosis of
various cancers. However, the role of hypoxia-related long non-coding RNAs (HRLs) in …

Comprehensive analysis of prognostic value and immune infiltration of chromobox family members in colorectal cancer

Q Li, Y Pan, Z Cao, S Zhao - Frontiers in oncology, 2020 - frontiersin.org
Objective: Colorectal cancer (CRC) is one of the common malignant tumors worldwide.
Chromobox (CBX) family proteins are important components of epigenetic regulation …

Identification and verification of an immune-related lncRNA signature for predicting the prognosis of patients with bladder cancer

J Wang, C Shen, D Dong, X Zhong, Y Wang… - International …, 2021 - Elsevier
Background Recent studies have revealed the significant roles of immune-related long
noncoding RNAs (lncRNAs) in cancer development and progression. The identification of …

Combination of four serum exosomal MiRNAs as novel diagnostic biomarkers for early-stage gastric cancer

S Tang, J Cheng, Y Yao, C Lou, L Wang… - Frontiers in …, 2020 - frontiersin.org
Gastric cancer (GC) remains a leading cause of cancer-related mortality in the United States
and China, there is an urgent need to discover novel non-invasive biomarkers for the early …

An autophagy‐related long noncoding RNA signature contributes to poor prognosis in colorectal cancer

J Wei, X Ge, Y Tang, Y Qian, W Lu, K Jiang… - Journal of …, 2020 - Wiley Online Library
Purpose. Colorectal cancer is one of the most common malignant primary tumors, prone to
metastasis, and associated with a poor prognosis. As autophagy is closely related to the …

Systematic characterization of circular RNA-associated CeRNA network identified novel circRNA biomarkers in Alzheimer's disease

Y Zhang, F Yu, S Bao, J Sun - Frontiers in Bioengineering and …, 2019 - frontiersin.org
Alzheimer's disease (AD), a degenerative disease of the central nervous system, is the most
common form of dementia in old age. The complexity and behavior of circular RNA …

Improving bulk RNA-seq classification by transferring gene signature from single cells in acute myeloid leukemia

R Wang, X Zheng, J Wang, S Wan… - Briefings in …, 2022 - academic.oup.com
The advances in single-cell RNA sequencing (scRNA-seq) technologies enable the
characterization of transcriptomic profiles at the cellular level and demonstrate great promise …

A positive feedback loop of lncRNA MIR31HG-miR-361-3p-YY1 accelerates colorectal cancer progression through modulating proliferation, angiogenesis, and …

T Guo, D Liu, S Peng, M Wang, Y Li - Frontiers in oncology, 2021 - frontiersin.org
Background Colorectal cancer (CRC) is a common malignant tumor with high metastatic and
recurrent rates. This study probes the effect and mechanism of long non-coding RNA …