[HTML][HTML] A guidebook of spatial transcriptomic technologies, data resources and analysis approaches
Advances in transcriptomic technologies have deepened our understanding of the cellular
gene expression programs of multicellular organisms and provided a theoretical basis for …
gene expression programs of multicellular organisms and provided a theoretical basis for …
Joint dimension reduction and clustering analysis of single-cell RNA-seq and spatial transcriptomics data
Dimension reduction and (spatial) clustering is usually performed sequentially; however, the
low-dimensional embeddings estimated in the dimension-reduction step may not be …
low-dimensional embeddings estimated in the dimension-reduction step may not be …
Heteroskedastic PCA: Algorithm, optimality, and applications
Heteroskedastic PCA: Algorithm, optimality, and applications Page 1 The Annals of Statistics
2022, Vol. 50, No. 1, 53–80 https://doi.org/10.1214/21-AOS2074 © Institute of Mathematical …
2022, Vol. 50, No. 1, 53–80 https://doi.org/10.1214/21-AOS2074 © Institute of Mathematical …
Distributed linear regression by averaging
E Dobriban, Y Sheng - 2021 - projecteuclid.org
Distributed linear regression by averaging Page 1 The Annals of Statistics 2021, Vol. 49, No. 2,
918–943 https://doi.org/10.1214/20-AOS1984 © Institute of Mathematical Statistics, 2021 …
918–943 https://doi.org/10.1214/20-AOS1984 © Institute of Mathematical Statistics, 2021 …
Personalized pca: Decoupling shared and unique features
In this paper, we tackle a significant challenge in PCA: heterogeneity. When data are
collected from different sources with heterogeneous trends while still sharing some …
collected from different sources with heterogeneous trends while still sharing some …
Stochastic gradients for large-scale tensor decomposition
Tensor decomposition is a well-known tool for multiway data analysis. This work proposes
using stochastic gradients for efficient generalized canonical polyadic (GCP) tensor …
using stochastic gradients for efficient generalized canonical polyadic (GCP) tensor …
[HTML][HTML] Spatial Transcriptomics in Human Cardiac Tissue
Q Nguyen, LW Tung, B Lin, R Sivakumar, F Sar… - International Journal of …, 2025 - mdpi.com
Spatial transcriptomics has transformed our understanding of gene expression by
preserving the spatial context within tissues. This review focuses on the application of spatial …
preserving the spatial context within tissues. This review focuses on the application of spatial …
Biwhitening reveals the rank of a count matrix
Estimating the rank of a corrupted data matrix is an important task in data analysis, most
notably for choosing the number of components in principal component analysis. Significant …
notably for choosing the number of components in principal component analysis. Significant …
Matrix denoising with partial noise statistics: optimal singular value shrinkage of spiked F-matrices
We study the problem of estimating a large, low-rank matrix corrupted by additive noise of
unknown covariance, assuming one has access to additional side information in the form of …
unknown covariance, assuming one has access to additional side information in the form of …
Selecting the number of components in PCA via random signflips
Dimensionality reduction via PCA and factor analysis is an important tool of data analysis. A
critical step is selecting the number of components. However, existing methods (such as the …
critical step is selecting the number of components. However, existing methods (such as the …