The ontology for biomedical investigations

A Bandrowski, R Brinkman, M Brochhausen, MH Brush… - PloS one, 2016 - journals.plos.org
The Ontology for Biomedical Investigations (OBI) is an ontology that provides terms with
precisely defined meanings to describe all aspects of how investigations in the biological …

The infectious disease ontology in the age of COVID-19

S Babcock, J Beverley, LG Cowell, B Smith - Journal of biomedical …, 2021 - Springer
Background Effective response to public health emergencies, such as we are now
experiencing with COVID-19, requires data sharing across multiple disciplines and data …

Machine actionable metadata models

D Batista, A Gonzalez-Beltran, SA Sansone… - Scientific Data, 2022 - nature.com
Community-developed minimum information checklists are designed to drive the rich and
consistent reporting of metadata, underpinning the reproducibility and reuse of the data …

[PDF][PDF] Quality assessment methodologies for linked open data

A Zaveri, A Rula, A Maurino… - … to Semantic Web …, 2013 - semantic-web-journal.net
The development and standardization of semantic web technologies have resulted in an
unprecedented volume of data being published on the Web as Linked Open Data (LOD) …

An open annotation ontology for science on web 3.0

P Ciccarese, M Ocana, LJ Garcia Castro, S Das… - Journal of biomedical …, 2011 - Springer
Background There is currently a gap between the rich and expressive collection of
published biomedical ontologies, and the natural language expression of biomedical papers …

Ontology engineering: Current state, challenges, and future directions

T Tudorache - Semantic Web, 2020 - content.iospress.com
In the last decade, ontologies have become widely adopted in a variety of fields ranging
from biomedicine, to finance, engineering, law, and cultural heritage. The ontology …

BioAssay Ontology (BAO): a semantic description of bioassays and high-throughput screening results

U Visser, S Abeyruwan, U Vempati, RP Smith… - BMC …, 2011 - Springer
Background High-throughput screening (HTS) is one of the main strategies to identify novel
entry points for the development of small molecule chemical probes and drugs and is now …

Evaluation of research in biomedical ontologies

R Hoehndorf, M Dumontier… - Briefings in …, 2013 - academic.oup.com
Ontologies are now pervasive in biomedicine, where they serve as a means to standardize
terminology, to enable access to domain knowledge, to verify data consistency and to …

Ontologies as integrative tools for plant science

RL Walls, B Athreya, L Cooper, J Elser… - American journal of …, 2012 - Wiley Online Library
• Premise of the study: Bio‐ontologies are essential tools for accessing and analyzing the
rapidly growing pool of plant genomic and phenomic data. Ontologies provide structured …

Formal ontologies in biomedical knowledge representation

S Schulz, L Jansen - Yearbook of medical informatics, 2013 - thieme-connect.com
Objectives: Medical decision support and other intelligent applications in the life sciences
depend on increasing amounts of digital information. Knowledge bases as well as formal …