Structural diversity and protein engineering of the aminoacyl-tRNA synthetases

JJ Perona, A Hadd - Biochemistry, 2012 - ACS Publications
Aminoacyl-tRNA synthetases (aaRS) are the enzymes that ensure faithful transmission of
genetic information in all living cells, and are central to the develo** technologies for …

Recent advances in genetic code engineering in Escherichia coli

MG Hoesl, N Budisa - Current opinion in biotechnology, 2012 - Elsevier
The expansion of the genetic code is gradually becoming a core discipline in Synthetic
Biology. It offers the best possible platform for the transfer of numerous chemical reactions …

Predicting the Minimal Translation Apparatus: Lessons from the Reductive Evolution of Mollicutes

H Grosjean, M Breton, P Sirand-Pugnet, F Tardy… - PLoS …, 2014 - journals.plos.org
Mollicutes is a class of parasitic bacteria that have evolved from a common Firmicutes
ancestor mostly by massive genome reduction. With genomes under 1 Mbp in size, most …

Reconstructing a missing link in the evolution of a recently diverged phosphotriesterase by active-site loop remodeling

L Afriat-Jurnou, CJ Jackson, DS Tawfik - Biochemistry, 2012 - ACS Publications
Only decades after the introduction of organophosphate pesticides, bacterial
phosphotriesterases (PTEs) have evolved to catalyze their degradation with remarkable …

Comprehensive quantitative modeling of translation efficiency in a genome‐reduced bacterium

M Weber, A Sogues, E Yus, R Burgos… - Molecular Systems …, 2023 - embopress.org
Translation efficiency has been mainly studied by ribosome profiling, which only provides an
incomplete picture of translation kinetics. Here, we integrated the absolute quantifications of …

Evolution and variation in amide aminoacyl‐tRNA synthesis

AM Lewis, T Fallon, GA Dittemore, K Sheppard - IUBMB life, 2024 - Wiley Online Library
The amide proteogenic amino acids, asparagine and glutamine, are two of the twenty amino
acids used in translation by all known life. The aminoacyl‐tRNA synthetases for asparagine …

[HTML][HTML] Near-cognate suppression of amber, opal and quadruplet codons competes with aminoacyl-tRNAPyl for genetic code expansion

P O'Donoghue, L Prat, IU Heinemann, J Ling, K Odoi… - FEBS letters, 2012 - Elsevier
Over 300 amino acids are found in proteins in nature, yet typically only 20 are genetically
encoded. Reassigning stop codons and use of quadruplet codons emerged as the main …

Evolution of life on earth: tRNA, aminoacyl-tRNA synthetases and the genetic code

L Lei, ZF Burton - Life, 2020 - mdpi.com
Life on Earth and the genetic code evolved around tRNA and the tRNA anticodon. We posit
that the genetic code initially evolved to synthesize polyglycine as a cross-linking agent to …

Engineering oxidoreductases: maquette proteins designed from scratch

BR Lichtenstein, TA Farid, G Kodali… - Biochemical Society …, 2012 - portlandpress.com
The study of natural enzymes is complicated by the fact that only the most recent
evolutionary progression can be observed. In particular, natural oxidoreductases stand out …

Visualizing tRNA-dependent mistranslation in human cells

JT Lant, MD Berg, DHW Sze, KS Hoffman… - Rna …, 2018 - Taylor & Francis
High-fidelity translation and a strictly accurate proteome were originally assumed as
essential to life and cellular viability. Yet recent studies in bacteria and eukaryotic model …