A field guide to eukaryotic transposable elements

JN Wells, C Feschotte - Annual review of genetics, 2020 - annualreviews.org
Transposable elements (TEs) are mobile DNA sequences that propagate within genomes.
Through diverse invasion strategies, TEs have come to occupy a substantial fraction of …

Causes and consequences of varying transposable element activity: An evolutionary perspective

AJ Betancourt, KHC Wei, Y Huang… - Annual Review of …, 2024 - annualreviews.org
Transposable elements (TEs) are genomic parasites found in nearly all eukaryotes,
including humans. This evolutionary success of TEs is due to their replicative activity …

Zebrafish transposable elements show extensive diversification in age, genomic distribution, and developmental expression

NC Chang, Q Rovira, J Wells, C Feschotte… - Genome …, 2022 - genome.cshlp.org
There is considerable interest in understanding the effect of transposable elements (TEs) on
embryonic development. Studies in humans and mice are limited by the difficulty of working …

HiTE: a fast and accurate dynamic boundary adjustment approach for full-length transposable element detection and annotation

K Hu, P Ni, M Xu, Y Zou, J Chang, X Gao, Y Li… - Nature …, 2024 - nature.com
Recent advancements in genome assembly have greatly improved the prospects for
comprehensive annotation of Transposable Elements (TEs). However, existing methods for …

Transposable element expansion and low-level piRNA silencing in grasshoppers may cause genome gigantism

X Liu, M Majid, H Yuan, H Chang, L Zhao, Y Nie, L He… - BMC biology, 2022 - Springer
Abstract Background Transposable elements (TEs) have been likened to parasites in the
genome that reproduce and move ceaselessly in the host, continuously enlarging the host …

A chromosome-level reference genome of red swamp crayfish Procambarus clarkii provides insights into the gene families regarding growth or development in …

Z Xu, T Gao, Y Xu, X Li, J Li, H Lin, W Yan, J Pan… - Genomics, 2021 - Elsevier
Red swamp crayfish Procambarus clarkii is an ecologically and economically important
crustacean species. Here, based on a de novo assembly strategy combining PacBio with Hi …

[HTML][HTML] The structural, functional and evolutionary impact of transposable elements in eukaryotes

D Almojil, Y Bourgeois, M Falis, I Hariyani, J Wilcox… - Genes, 2021 - mdpi.com
Transposable elements (TEs) are nearly ubiquitous in eukaryotes. The increase in genomic
data, as well as progress in genome annotation and molecular biology techniques, have …

[HTML][HTML] Factors regulating the activity of LINE1 retrotransposons

MS Protasova, TV Andreeva, EI Rogaev - Genes, 2021 - mdpi.com
LINE-1 (L1) is a class of autonomous mobile genetic elements that form somatic mosaicisms
in various tissues of the organism. The activity of L1 retrotransposons is strictly controlled by …

Myriapod genomes reveal ancestral horizontal gene transfer and hormonal gene loss in millipedes

WL So, W Nong, Y **e, T Baril, H Ma, Z Qu… - Nature …, 2022 - nature.com
Animals display a fascinating diversity of body plans. Correspondingly, genomic analyses
have revealed dynamic evolution of gene gains and losses among animal lineages. Here …

New insights into the evolutionary dynamic and lineage divergence of gasdermin E in metazoa

Z Yuan, S Jiang, K Qin, L Sun - Frontiers in Cell and Developmental …, 2022 - frontiersin.org
Gasdermin (GSDM) is a family of pore-forming proteins that induce pyroptosis. To date, the
origin and evolution of GSDM in Metazoa remain elusive. Here, we found that GSDM …