The plastisphere of biodegradable and conventional microplastics from residues exhibit distinct microbial structure, network and function in plastic-mulching farmland

K Li, W Jia, L Xu, M Zhang, Y Huang - Journal of Hazardous Materials, 2023 - Elsevier
The inhomogeneity of plastisphere and soil may result in different microbial communities,
thus potentially affecting soil functions. Biodegradable plastics offer an alternative to …

LDPE microplastic films alter microbial community composition and enzymatic activities in soil

Y Huang, Y Zhao, J Wang, M Zhang, W Jia, X Qin - Environmental Pollution, 2019 - Elsevier
Concerns regarding microplastic contamination have spread from aquatic environments to
terrestrial systems with a growing number of studies have been reported. Notwithstanding …

Evidence of selective enrichment of bacterial assemblages and antibiotic resistant genes by microplastics in urban rivers

J Wang, X Qin, J Guo, W Jia, Q Wang, M Zhang… - Water Research, 2020 - Elsevier
The ubiquitous presence of microplastics in aquatic environments has recently drawn
considerable attention due to their potential threat to the entire ecosystem. The colonization …

Microplastics from mulching film is a distinct habitat for bacteria in farmland soil

M Zhang, Y Zhao, X Qin, W Jia, L Chai, M Huang… - Science of the Total …, 2019 - Elsevier
Microplastics, as an emerging pollutant of global importance, have been well documented in
aquatic ecosystems. However, little is known about the effects of microplastics on …

[HTML][HTML] Dynamics in transcriptomics: advancements in RNA-seq time course and downstream analysis

D Spies, C Ciaudo - Computational and structural biotechnology journal, 2015 - Elsevier
Abstract Analysis of gene expression has contributed to a plethora of biological and medical
research studies. Microarrays have been intensively used for the profiling of gene …

Adaptive advantages of restorative RNA editing in fungi for resolving survival-reproduction trade-offs

Z Qi, P Lu, X Long, X Cao, M Wu, K **n, T Xue… - Science …, 2024 - science.org
RNA editing in various organisms commonly restores RNA sequences to their ancestral
state, but its adaptive advantages are debated. In fungi, restorative editing corrects …

An orphan protein of Fusarium graminearum modulates host immunity by mediating proteasomal degradation of TaSnRK1α

C Jiang, R Hei, Y Yang, S Zhang, Q Wang… - Nature …, 2020 - nature.com
Fusarium graminearum is a causal agent of Fusarium head blight (FHB) and a
deoxynivalenol (DON) producer. In this study, OSP24 is identified as an important virulence …

Differential expression analysis for RNA-Seq: an overview of statistical methods and computational software: supplementary issue: sequencing platform modeling and …

HC Huang, Y Niu, LX Qin - Cancer informatics, 2015 - journals.sagepub.com
Deep sequencing has recently emerged as a powerful alternative to microarrays for the high-
throughput profiling of gene expression. In order to account for the discrete nature of RNA …

The Fng3 ING protein regulates H3 acetylation and H4 deacetylation by interacting with two distinct histone‐modifying complexes

H Xu, M Ye, A **a, H Jiang, P Huang, H Liu… - New …, 2022 - Wiley Online Library
The steady‐state level of histone acetylation is maintained by histone acetyltransferase
(HAT) and histone deacetylase (HDAC) complexes. INhibitor of Growth (ING) proteins are …

Opposing functions of Fng1 and the Rpd3 HDAC complex in H4 acetylation in Fusarium graminearum

H Jiang, A **a, M Ye, J Ren, D Li, H Liu, Q Wang… - PLoS …, 2020 - journals.plos.org
Histone acetylation, balanced by histone acetyltransferase (HAT) and histone deacetylase
(HDAC) complexes, affects dynamic transitions of chromatin structure to regulate …