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Hidden network generating rules from partially observed complex networks
Complex biological, neuroscience, geoscience and social networks exhibit heterogeneous
self-similar higher order topological structures that are usually characterized as being …
self-similar higher order topological structures that are usually characterized as being …
Map** robust multiscale communities in chromosome contact networks
To better understand DNA's 3D folding in cell nuclei, researchers developed chromosome
capture methods such as Hi-C that measure the contact frequencies between all DNA …
capture methods such as Hi-C that measure the contact frequencies between all DNA …
Effective model of protein-mediated interactions in chromatin
Protein-mediated interactions are ubiquitous in the cellular environment, and particularly in
the nucleus, where they are responsible for the structuring of chromatin. We show through …
the nucleus, where they are responsible for the structuring of chromatin. We show through …
Towards forecasting epigenetic repression
MJ Lundkvist - 2024 - diva-portal.org
Multicellular organisms form many different cell types from one genome, which requires
differential gene activity. The Polycomb system upholds the correct gene expression …
differential gene activity. The Polycomb system upholds the correct gene expression …
Evidence of Kolmogorov like scalings and multifractality in the rainfall events
J GhoshDastider, D Pal, PK Mishra - arxiv preprint arxiv:2405.03463, 2024 - arxiv.org
In this paper we present a detailed statistical analysis related to the characterization of the
spatial and temporal fluctuations present in the rainfall patterns of North-East region …
spatial and temporal fluctuations present in the rainfall patterns of North-East region …
ENT3C: an entropy-based similarity measure for Hi-C and micro-C derived contact matrices
X Lainscsek, L Taher - NAR Genomics and Bioinformatics, 2024 - academic.oup.com
Hi-C and micro-C sequencing have shed light on the profound importance of 3D genome
organization in cellular function by probing 3D contact frequencies across the linear …
organization in cellular function by probing 3D contact frequencies across the linear …
Predicting chromosomal compartments directly from the nucleotide sequence with DNA-DDA
Abstract Three-dimensional (3D) genome architecture is characterized by multi-scale
patterns and plays an essential role in gene regulation. Chromatin conformation capturing …
patterns and plays an essential role in gene regulation. Chromatin conformation capturing …
Finding a target on DNA: interplay between the genomic sequence and 3D structure
L Hedström - 2024 - diva-portal.org
Cells are complex systems of interconnected machinery that maintains, repairs and furthers
the growth of themselves. In the center lies the instructions that coordinate it all—the DNA …
the growth of themselves. In the center lies the instructions that coordinate it all—the DNA …
[PDF][PDF] Predicting 3D genome architecture directly from the nucleotide sequence with DNA-DDA
X Lainscsek, L Taher - 2022 - researchgate.net
The hierarchical three-dimensional (3D) architecture of the genome allows linearly distal loci
to interact with one another, thereby impacting genome function. Chromosome conformation …
to interact with one another, thereby impacting genome function. Chromosome conformation …