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Two decades of Martini: Better beads, broader scope
The Martini model, a coarse‐grained force field for molecular dynamics simulations, has
been around for nearly two decades. Originally developed for lipid‐based systems by the …
been around for nearly two decades. Originally developed for lipid‐based systems by the …
Combining machine learning and computational chemistry for predictive insights into chemical systems
Machine learning models are poised to make a transformative impact on chemical sciences
by dramatically accelerating computational algorithms and amplifying insights available from …
by dramatically accelerating computational algorithms and amplifying insights available from …
Martini 3: a general purpose force field for coarse-grained molecular dynamics
The coarse-grained Martini force field is widely used in biomolecular simulations. Here we
present the refined model, Martini 3 (http://cgmartini. nl), with an improved interaction …
present the refined model, Martini 3 (http://cgmartini. nl), with an improved interaction …
Moltemplate: A tool for coarse-grained modeling of complex biological matter and soft condensed matter physics
Coarse-grained models have long been considered indispensable tools in the investigation
of biomolecular dynamics and assembly. However, the process of simulating such models is …
of biomolecular dynamics and assembly. However, the process of simulating such models is …
Molecular insights into the complex mechanics of plant epidermal cell walls
Plants have evolved complex nanofibril-based cell walls to meet diverse biological and
physical constraints. How strength and extensibility emerge from the nanoscale-to …
physical constraints. How strength and extensibility emerge from the nanoscale-to …
Computational modeling of realistic cell membranes
Cell membranes contain a large variety of lipid types and are crowded with proteins,
endowing them with the plasticity needed to fulfill their key roles in cell functioning. The …
endowing them with the plasticity needed to fulfill their key roles in cell functioning. The …
Emerging diversity in lipid–protein interactions
Membrane lipids interact with proteins in a variety of ways, ranging from providing a stable
membrane environment for proteins to being embedded in to detailed roles in complicated …
membrane environment for proteins to being embedded in to detailed roles in complicated …
Tailoring the barrier properties of PLA: a state-of-the-art review for food packaging applications
S Marano, E Laudadio, C Minnelli, P Stipa - Polymers, 2022 - mdpi.com
It is now well recognized that the production of petroleum-based packaging materials has
created serious ecological problems for the environment due to their resistance to …
created serious ecological problems for the environment due to their resistance to …
A review of advancements in coarse-grained molecular dynamics simulations
Over the last few years, coarse-grained molecular dynamics has emerged as a way to model
large and complex systems in an efficient and inexpensive manner due to its lowered …
large and complex systems in an efficient and inexpensive manner due to its lowered …
Coarse-grained protein models and their applications
The traditional computational modeling of protein structure, dynamics, and interactions
remains difficult for many protein systems. It is mostly due to the size of protein …
remains difficult for many protein systems. It is mostly due to the size of protein …