Probing the dynamic RNA structurome and its functions

RC Spitale, D Incarnato - Nature Reviews Genetics, 2023 - nature.com
RNA is a key regulator of almost every cellular process, and the structures adopted by RNA
molecules are thought to be central to their functions. The recent fast-paced evolution of high …

Advances and opportunities in RNA structure experimental determination and computational modeling

J Zhang, Y Fei, L Sun, QC Zhang - Nature methods, 2022 - nature.com
Beyond transferring genetic information, RNAs are molecules with diverse functions that
include catalyzing biochemical reactions and regulating gene expression. Most of these …

Structure and degradation of circular RNAs regulate PKR activation in innate immunity

CX Liu, X Li, F Nan, S Jiang, X Gao, SK Guo, W Xue… - Cell, 2019 - cell.com
Circular RNAs (circRNAs) produced from back-splicing of exons of pre-mRNAs are widely
expressed, but current understanding of their functions is limited. These RNAs are stable in …

Identification of RNA structures and their roles in RNA functions

X Cao, Y Zhang, Y Ding, Y Wan - Nature Reviews Molecular Cell …, 2024 - nature.com
The development of high-throughput RNA structure profiling methods in the past decade has
greatly facilitated our ability to map and characterize different aspects of RNA structures …

In vivo single-molecule analysis reveals COOLAIR RNA structural diversity

M Yang, P Zhu, J Cheema, R Bloomer, P Mikulski… - Nature, 2022 - nature.com
Cellular RNAs are heterogeneous with respect to their alternative processing and secondary
structures, but the functional importance of this complexity is still poorly understood. A set of …

Genome-wide map** of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements

I Manfredonia, C Nithin… - Nucleic acids …, 2020 - academic.oup.com
SARS-CoV-2 is a betacoronavirus with a linear single-stranded, positive-sense RNA
genome, whose outbreak caused the ongoing COVID-19 pandemic. The ability of …

lncRNA SLERT controls phase separation of FC/DFCs to facilitate Pol I transcription

M Wu, G Xu, C Han, PF Luan, YH **ng, F Nan, LZ Yang… - Science, 2021 - science.org
RNA polymerase I (Pol I) transcription takes place at the border of the fibrillar center (FC)
and the dense fibrillar component (DFC) in the nucleolus. Here, we report that individual …

[HTML][HTML] Pervasive downstream RNA hairpins dynamically dictate start-codon selection

Y **ang, W Huang, L Tan, T Chen, Y He, PS Irving… - Nature, 2023 - nature.com
Translational reprogramming allows organisms to adapt to changing conditions. Upstream
start codons (uAUGs), which are prevalently present in mRNAs, have crucial roles in …

Biochemistry and molecular biology of flaviviruses

NJ Barrows, RK Campos, KC Liao, KR Prasanth… - Chemical …, 2018 - ACS Publications
Flaviviruses, such as dengue, Japanese encephalitis, tick-borne encephalitis, West Nile,
yellow fever, and Zika viruses, are critically important human pathogens that sicken a …

Mechanisms and regulation of alternative pre-mRNA splicing

Y Lee, DC Rio - Annual review of biochemistry, 2015 - annualreviews.org
Precursor messenger RNA (pre-mRNA) splicing is a critical step in the posttranscriptional
regulation of gene expression, providing significant expansion of the functional proteome of …