Physiology and diseases of tissue-resident macrophages

T Lazarov, S Juarez-Carreño, N Cox, F Geissmann - Nature, 2023‏ - nature.com
Embryo-derived tissue-resident macrophages are the first representatives of the
haematopoietic lineage to emerge in metazoans. In mammals, resident macrophages …

[HTML][HTML] Wound healing, fibroblast heterogeneity, and fibrosis

HE Talbott, S Mascharak, M Griffin, DC Wan… - Cell stem cell, 2022‏ - cell.com
Fibroblasts are highly dynamic cells that play a central role in tissue repair and fibrosis.
However, the mechanisms by which they contribute to both physiologic and pathologic …

Profiling cell identity and tissue architecture with single-cell and spatial transcriptomics

GS Gulati, JP D'Silva, Y Liu, L Wang… - … Reviews Molecular Cell …, 2024‏ - nature.com
Single-cell transcriptomics has broadened our understanding of cellular diversity and gene
expression dynamics in healthy and diseased tissues. Recently, spatial transcriptomics has …

[HTML][HTML] Deciphering cell states and genealogies of human haematopoiesis

C Weng, F Yu, D Yang, M Poeschla, LA Liggett… - Nature, 2024‏ - nature.com
The human blood system is maintained through the differentiation and massive amplification
of a limited number of long-lived haematopoietic stem cells (HSCs). Perturbations to this …

[HTML][HTML] Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution

D Yang, MG Jones, S Naranjo, WM Rideout, KHJ Min… - Cell, 2022‏ - cell.com
Tumor evolution is driven by the progressive acquisition of genetic and epigenetic
alterations that enable uncontrolled growth and expansion to neighboring and distal tissues …

[HTML][HTML] MDSC: Markers, development, states, and unaddressed complexity

S Hegde, AM Leader, M Merad - Immunity, 2021‏ - cell.com
Myeloid-derived suppressor cells (MDSCs) are one of the most discussed biological entities
in immunology. While the context and classification of this group of cells has evolved …

A mouse model with high clonal barcode diversity for joint lineage, transcriptomic, and epigenomic profiling in single cells

L Li, S Bowling, SE McGeary, Q Yu, B Lemke, K Alcedo… - Cell, 2023‏ - cell.com
Cellular lineage histories and their molecular states encode fundamental principles of tissue
development and homeostasis. Current lineage-recording mouse models have insufficient …

Lineage tracing meets single-cell omics: opportunities and challenges

DE Wagner, AM Klein - Nature Reviews Genetics, 2020‏ - nature.com
A fundamental goal of developmental and stem cell biology is to map the developmental
history (ontogeny) of differentiated cell types. Recent advances in high-throughput single …

Lifelong multilineage contribution by embryonic-born blood progenitors

SH Patel, C Christodoulou, C Weinreb, Q Yu… - Nature, 2022‏ - nature.com
Haematopoietic stem cells (HSCs) arise in the embryo from the arterial endothelium through
a process known as the endothelial-to-haematopoietic transition (EHT),,–. This process …

Characterization of cell fate probabilities in single-cell data with Palantir

M Setty, V Kiseliovas, J Levine, A Gayoso… - Nature …, 2019‏ - nature.com
Single-cell RNA sequencing studies of differentiating systems have raised fundamental
questions regarding the discrete versus continuous nature of both differentiation and cell …