Using clusterProfiler to characterize multiomics data
PICRUSt2 for prediction of metagenome functions
To the Editor—One limitation of microbial community marker-gene sequencing is that it does
not provide information about the functional composition of sampled communities …
not provide information about the functional composition of sampled communities …
Fecal microbiota transplant promotes response in immunotherapy-refractory melanoma patients
The gut microbiome has been shown to influence the response of tumors to anti–PD-1
(programmed cell death–1) immunotherapy in preclinical mouse models and observational …
(programmed cell death–1) immunotherapy in preclinical mouse models and observational …
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
To the Editor—Rapid advances in DNA-sequencing and bioinformatics technologies in the
past two decades have substantially improved understanding of the microbial world. This …
past two decades have substantially improved understanding of the microbial world. This …
Targeted suppression of human IBD-associated gut microbiota commensals by phage consortia for treatment of intestinal inflammation
Human gut commensals are increasingly suggested to impact non-communicable diseases,
such as inflammatory bowel diseases (IBD), yet their targeted suppression remains a …
such as inflammatory bowel diseases (IBD), yet their targeted suppression remains a …
Multivariable association discovery in population-scale meta-omics studies
It is challenging to associate features such as human health outcomes, diet, environmental
conditions, or other metadata to microbial community measurements, due in part to their …
conditions, or other metadata to microbial community measurements, due in part to their …
Gut microbiome structure and metabolic activity in inflammatory bowel disease
EA Franzosa, A Sirota-Madi, J Avila-Pacheco… - Nature …, 2019 - nature.com
The inflammatory bowel diseases (IBDs), which include Crohn's disease (CD) and ulcerative
colitis (UC), are multifactorial chronic conditions of the gastrointestinal tract. While IBD has …
colitis (UC), are multifactorial chronic conditions of the gastrointestinal tract. While IBD has …