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ROS generated from biotic stress: Effects on plants and alleviation by endophytic microbes
Aerobic living is thought to generate reactive oxygen species (ROS), which are an inevitable
chemical component. They are produced exclusively in cellular compartments in aerobic …
chemical component. They are produced exclusively in cellular compartments in aerobic …
Using machine learning approaches for multi-omics data analysis: A review
With the development of modern high-throughput omic measurement platforms, it has
become essential for biomedical studies to undertake an integrative (combined) approach to …
become essential for biomedical studies to undertake an integrative (combined) approach to …
CheckV assesses the quality and completeness of metagenome-assembled viral genomes
Millions of new viral sequences have been identified from metagenomes, but the quality and
completeness of these sequences vary considerably. Here we present CheckV, an …
completeness of these sequences vary considerably. Here we present CheckV, an …
A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range
Q Lian, B Huettel, B Walkemeier, B Mayjonade… - Nature …, 2024 - nature.com
Although originally primarily a system for functional biology, Arabidopsis thaliana has, owing
to its broad geographical distribution and adaptation to diverse environments, developed …
to its broad geographical distribution and adaptation to diverse environments, developed …
The Pfam protein families database: towards a more sustainable future
In the last two years the Pfam database (http://pfam. xfam. org) has undergone a substantial
reorganisation to reduce the effort involved in making a release, thereby permitting more …
reorganisation to reduce the effort involved in making a release, thereby permitting more …
Comparative genomics of the major parasitic worms
Nature genetics, 2019 - nature.com
Parasitic nematodes (roundworms) and platyhelminths (flatworms) cause debilitating
chronic infections of humans and animals, decimate crop production and are a major …
chronic infections of humans and animals, decimate crop production and are a major …
A census of human RNA-binding proteins
Post-transcriptional gene regulation (PTGR) concerns processes involved in the maturation,
transport, stability and translation of coding and non-coding RNAs. RNA-binding proteins …
transport, stability and translation of coding and non-coding RNAs. RNA-binding proteins …
Determination and inference of eukaryotic transcription factor sequence specificity
Transcription factor (TF) DNA sequence preferences direct their regulatory activity, but are
currently known for only∼ 1% of eukaryotic TFs. Broadly sampling DNA-binding domain …
currently known for only∼ 1% of eukaryotic TFs. Broadly sampling DNA-binding domain …
A reference genome for common bean and genome-wide analysis of dual domestications
Common bean (Phaseolus vulgaris L.) is the most important grain legume for human
consumption and has a role in sustainable agriculture owing to its ability to fix atmospheric …
consumption and has a role in sustainable agriculture owing to its ability to fix atmospheric …
Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal
The cBioPortal for Cancer Genomics (http://cbioportal. org) provides a Web resource for
exploring, visualizing, and analyzing multidimensional cancer genomics data. The portal …
exploring, visualizing, and analyzing multidimensional cancer genomics data. The portal …