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Deep learning in drug discovery: an integrative review and future challenges
Recently, using artificial intelligence (AI) in drug discovery has received much attention
since it significantly shortens the time and cost of develo** new drugs. Deep learning (DL) …
since it significantly shortens the time and cost of develo** new drugs. Deep learning (DL) …
Graph neural networks in recommender systems: a survey
With the explosive growth of online information, recommender systems play a key role to
alleviate such information overload. Due to the important application value of recommender …
alleviate such information overload. Due to the important application value of recommender …
Chemistry-intuitive explanation of graph neural networks for molecular property prediction with substructure masking
Graph neural networks (GNNs) have been widely used in molecular property prediction, but
explaining their black-box predictions is still a challenge. Most existing explanation methods …
explaining their black-box predictions is still a challenge. Most existing explanation methods …
The shapley value in machine learning
Over the last few years, the Shapley value, a solution concept from cooperative game theory,
has found numerous applications in machine learning. In this paper, we first discuss …
has found numerous applications in machine learning. In this paper, we first discuss …
Interpretable and generalizable graph learning via stochastic attention mechanism
Interpretable graph learning is in need as many scientific applications depend on learning
models to collect insights from graph-structured data. Previous works mostly focused on …
models to collect insights from graph-structured data. Previous works mostly focused on …
Artificial intelligence for science in quantum, atomistic, and continuum systems
Advances in artificial intelligence (AI) are fueling a new paradigm of discoveries in natural
sciences. Today, AI has started to advance natural sciences by improving, accelerating, and …
sciences. Today, AI has started to advance natural sciences by improving, accelerating, and …
Evaluating explainability for graph neural networks
As explanations are increasingly used to understand the behavior of graph neural networks
(GNNs), evaluating the quality and reliability of GNN explanations is crucial. However …
(GNNs), evaluating the quality and reliability of GNN explanations is crucial. However …
Explainability in graph neural networks: A taxonomic survey
Deep learning methods are achieving ever-increasing performance on many artificial
intelligence tasks. A major limitation of deep models is that they are not amenable to …
intelligence tasks. A major limitation of deep models is that they are not amenable to …
Discovering invariant rationales for graph neural networks
Intrinsic interpretability of graph neural networks (GNNs) is to find a small subset of the input
graph's features--rationale--which guides the model prediction. Unfortunately, the leading …
graph's features--rationale--which guides the model prediction. Unfortunately, the leading …
A knowledge-guided pre-training framework for improving molecular representation learning
Learning effective molecular feature representation to facilitate molecular property prediction
is of great significance for drug discovery. Recently, there has been a surge of interest in pre …
is of great significance for drug discovery. Recently, there has been a surge of interest in pre …