Current understanding and optimization strategies for efficient lignin-enzyme interaction: A review

M Li, B Jiang, W Wu, S Wu, Y Yang, J Song… - International Journal of …, 2022 - Elsevier
From energy perspective, with abundant polysaccharides (45–85%), the renewable
lignocellulosic is recognized as the 2nd generation feedstock for bioethanol and bio-based …

The reaction mechanism of the Ideonella sakaiensis PETase enzyme

T Burgin, BC Pollard, BC Knott, HB Mayes… - Communications …, 2024 - nature.com
Polyethylene terephthalate (PET), the most abundantly produced polyester plastic, can be
depolymerized by the Ideonella sakaiensis PETase enzyme. Based on multiple PETase …

Glycosyltransferase family 47 (GT47) proteins in plants and animals

L Zhang, PK Prabhakar, VS Bharadwaj… - Essays in …, 2023 - portlandpress.com
Glycosyltransferases (GTs) are carbohydrate-active enzymes that are encoded by the
genomes of organisms spanning all domains of life. GTs catalyze glycosidic bond formation …

In vitro studies of the protein-interaction network of cell-wall lytic transglycosylase RlpA of Pseudomonas aeruginosa

LF Avila-Cobian, S De Benedetti, C Kim… - Communications …, 2022 - nature.com
The protein networks of cell-wall-biosynthesis assemblies are largely unknown. A key class
of enzymes in these assemblies is the lytic transglycosylases (LTs), of which eleven exist in …

Genomic evidence for the widespread presence of GH45 cellulases among soil invertebrates

H Muelbaier, F Arthen, G Collins, T Hickler… - Molecular …, 2024 - Wiley Online Library
Lignocellulose is a major component of vascular plant biomass. Its decomposition is crucial
for the terrestrial carbon cycle. Microorganisms are considered primary decomposers, but …

A trimeric glycosylated GH45 cellulase from the red abalone (Haliotis rufescens) exhibits endo and exoactivity

LJ Hernández-Benítez, MA Ramírez-Rodríguez… - Plos one, 2024 - journals.plos.org
The red abalone (Haliotis rufescens) represents North America's most important aquaculture
species. Its hepatopancreas is rich in cellulases and other polysaccharide-degrading …

Reconstructing reactivity in dynamic host–guest systems at atomistic resolution: amide hydrolysis under confinement in the cavity of a coordination cage

M Delle Piane, L Pesce, M Cioni, GM Pavan - Chemical Science, 2022 - pubs.rsc.org
Spatial confinement is widely employed by nature to attain unique efficiency in controlling
chemical reactions. Notable examples are enzymes, which selectively bind reactants and …

Revisiting theoretical tools and approaches for the valorization of recalcitrant lignocellulosic biomass to value-added chemicals

LTM Pham, H Choudhary, R Gauttam… - Frontiers in Energy …, 2022 - frontiersin.org
Biorefinery processes for converting lignocellulosic biomass to fuels and chemicals proceed
via an integrated series of steps. Biomass is first pretreated and deconstructed using …

QM/MM simulations of enzymatic hydrolysis of cellulose: probing the viability of an endocyclic mechanism for an inverting cellulase

CS Pereira, RL Silveira, MS Skaf - Journal of chemical information …, 2021 - ACS Publications
Glycoside hydrolases (GH) cleave carbohydrate glycosidic bonds and play pivotal roles in
living organisms and in many industrial processes. Unlike acid-catalyzed hydrolysis of …

Perspective: Path sampling methods applied to enzymatic catalysis

SD Schwartz - Journal of chemical theory and computation, 2022 - ACS Publications
This Perspective reviews the use of Transition Path Sampling methods to study
enzymatically catalyzed chemical reactions. First applied by our group to an enzymatic …