Population genomics for wildlife conservation and management

PA Hohenlohe, WC Funk, OP Rajora - Molecular Ecology, 2021 - Wiley Online Library
Biodiversity is under threat worldwide. Over the past decade, the field of population
genomics has developed across nonmodel organisms, and the results of this research have …

Next-generation data filtering in the genomics era

W Hemstrom, JA Grummer, G Luikart… - Nature Reviews …, 2024 - nature.com
Genomic data are ubiquitous across disciplines, from agriculture to biodiversity, ecology,
evolution and human health. However, these datasets often contain noise or errors and are …

Evolution of immune genes is associated with the Black Death

J Klunk, TP Vilgalys, CE Demeure, X Cheng… - Nature, 2022 - nature.com
Infectious diseases are among the strongest selective pressures driving human evolution,.
This includes the single greatest mortality event in recorded history, the first outbreak of the …

dartR v2: An accessible genetic analysis platform for conservation, ecology and agriculture

JL Mijangos, B Gruber, O Berry… - Methods in Ecology …, 2022 - Wiley Online Library
Innumerable approaches to analyse genetic data are now available to guide conservation,
ecological and agricultural projects. However, streamlined and accessible tools are needed …

A beginner's guide to low‐coverage whole genome sequencing for population genomics

RN Lou, A Jacobs, AP Wilder… - Molecular …, 2021 - Wiley Online Library
Low‐coverage whole genome sequencing (lcWGS) has emerged as a powerful and cost‐
effective approach for population genomic studies in both model and nonmodel species …

Finding the genomic basis of local adaptation: pitfalls, practical solutions, and future directions

S Hoban, JL Kelley, KE Lotterhos… - The American …, 2016 - journals.uchicago.edu
Uncovering the genetic and evolutionary basis of local adaptation is a major focus of
evolutionary biology. The recent development of cost-effective methods for obtaining high …

[SÁCH][B] Eco-evolutionary dynamics

AP Hendry - 2017 - degruyter.com
In recent years, scientists have realized that evolution can occur on timescales much shorter
than the" long lapse of ages" emphasized by Darwin—in fact, evolutionary change is …

pcadapt: an R package to perform genome scans for selection based on principal component analysis

K Luu, E Bazin, MGB Blum - Molecular ecology resources, 2017 - Wiley Online Library
The r package pcadapt performs genome scans to detect genes under selection based on
population genomic data. It assumes that candidate markers are outliers with respect to how …

The paradox of adaptive trait clines with nonclinal patterns in the underlying genes

KE Lotterhos - Proceedings of the National Academy of Sciences, 2023 - pnas.org
Multivariate climate change presents an urgent need to understand how species adapt to
complex environments. Population genetic theory predicts that loci under selection will form …

The search for loci under selection: trends, biases and progress

CW Ahrens, PD Rymer, A Stow, J Bragg… - Molecular …, 2018 - Wiley Online Library
Detecting genetic variants under selection using FST outlier analysis (OA) and
environmental association analyses (EAAs) are popular approaches that provide insight into …