Deregulation of ribosomal proteins in human cancers

W El Khoury, Z Nasr - Bioscience Reports, 2021 - portlandpress.com
The ribosome, the site for protein synthesis, is composed of ribosomal RNAs (rRNAs) and
ribosomal proteins (RPs). The latter have been shown to have many ribosomal and …

DM3Loc: multi-label mRNA subcellular localization prediction and analysis based on multi-head self-attention mechanism

D Wang, Z Zhang, Y Jiang, Z Mao, D Wang… - Nucleic acids …, 2021 - academic.oup.com
Subcellular localization of messenger RNAs (mRNAs), as a prevalent mechanism, gives
precise and efficient control for the translation process. There is mounting evidence for the …

The nucleolus, an ally, and an enemy of cancer cells

D Stępiński - Histochemistry and cell biology, 2018 - Springer
The rates of ribosome production by a nucleolus and of protein biosynthesis by ribosomes
are tightly correlated with the rate of cell growth and proliferation. All these processes must …

Statistical identification of cell type-specific spatially variable genes in spatial transcriptomics

L Shang, P Wu, X Zhou - Nature Communications, 2025 - nature.com
An essential task in spatial transcriptomics is identifying spatially variable genes (SVGs).
Here, we present Celina, a statistical method for systematically detecting cell type-specific …

Displacement of WDR5 from chromatin by a WIN site inhibitor with picomolar affinity

ER Aho, J Wang, RD Gogliotti, GC Howard, J Phan… - Cell reports, 2019 - cell.com
The chromatin-associated protein WDR5 is a promising target for pharmacological inhibition
in cancer. Drug discovery efforts center on the blockade of the" WIN site" of WDR5, a well …

Glioblastoma biomarkers in urinary extracellular vesicles reveal the potential for a 'liquid gold'biopsy

SM Hallal, Á Tűzesi, LA Sida, E **an, D Madani… - British Journal of …, 2024 - nature.com
Background Biomarkers that reflect glioblastoma tumour activity and treatment response are
urgently needed to help guide clinical management, particularly for recurrent disease. As the …

Clarion is a multi-label problem transformation method for identifying mRNA subcellular localizations

Y Bi, F Li, X Guo, Z Wang, T Pan, Y Guo… - Briefings in …, 2022 - academic.oup.com
Subcellular localization of messenger RNAs (mRNAs) plays a key role in the spatial
regulation of gene activity. The functions of mRNAs have been shown to be closely linked …

LINC01116-dependent upregulation of RNA polymerase I transcription drives oncogenic phenotypes in lung adenocarcinoma

SS Sarkar, M Sharma, S Saproo, S Naidu - Journal of Translational …, 2024 - Springer
Abstract Background Hyperactive RNA Polymerase I (Pol I) transcription is canonical in
cancer, associated with malignant proliferation, poor prognosis, epithelial-mesenchymal …

Mucus production, host-microbiome interactions, hormone sensitivity, and innate immune responses modeled in human cervix chips

Z Izadifar, J Cotton, S Chen, V Horvath… - Nature …, 2024 - nature.com
Modulation of the cervix by steroid hormones and commensal microbiome play a central role
in the health of the female reproductive tract. Here we describe organ-on-a-chip (Organ …

Regulation of RNA polymerase I stability and function

S Pitts, M Laiho - Cancers, 2022 - mdpi.com
Simple Summary Building ribosomes for cellular protein translation is a massive, energy-
consuming undertaking. The process is executed by all cells to replenish the relevant pools …