Questions and controversies in the study of time-varying functional connectivity in resting fMRI

DJ Lurie, D Kessler, DS Bassett, RF Betzel… - Network …, 2020 - direct.mit.edu
The brain is a complex, multiscale dynamical system composed of many interacting regions.
Knowledge of the spatiotemporal organization of these interactions is critical for establishing …

The chronnectome: time-varying connectivity networks as the next frontier in fMRI data discovery

VD Calhoun, R Miller, G Pearlson, T Adalı - Neuron, 2014 - cell.com
Recent years have witnessed a rapid growth of interest in moving functional magnetic
resonance imaging (fMRI) beyond simple scan-length averages and into approaches that …

Tracking whole-brain connectivity dynamics in the resting state

EA Allen, E Damaraju, SM Plis, EB Erhardt… - Cerebral …, 2014 - academic.oup.com
Spontaneous fluctuations are a hallmark of recordings of neural signals, emergent over time
scales spanning milliseconds and tens of minutes. However, investigations of intrinsic brain …

Deep learning for neuroimaging: a validation study

SM Plis, DR Hjelm, R Salakhutdinov, EA Allen… - Frontiers in …, 2014 - frontiersin.org
Deep learning methods have recently made notable advances in the tasks of classification
and representation learning. These tasks are important for brain imaging and neuroscience …

Diversity in independent component and vector analyses: Identifiability, algorithms, and applications in medical imaging

T Adali, M Anderson, GS Fu - IEEE Signal Processing …, 2014 - ieeexplore.ieee.org
Starting with a simple generative model and the assumption of statistical independence of
the underlying components, independent component analysis (ICA) decomposes a given …

Capturing inter-subject variability with group independent component analysis of fMRI data: a simulation study

EA Allen, EB Erhardt, Y Wei, T Eichele, VD Calhoun - Neuroimage, 2012 - Elsevier
A key challenge in functional neuroimaging is the meaningful combination of results across
subjects. Even in a sample of healthy participants, brain morphology and functional …

Restricted Boltzmann machines for neuroimaging: an application in identifying intrinsic networks

RD Hjelm, VD Calhoun, R Salakhutdinov, EA Allen… - NeuroImage, 2014 - Elsevier
Matrix factorization models are the current dominant approach for resolving meaningful data-
driven features in neuroimaging data. Among them, independent component analysis (ICA) …

Artifact removal in the context of group ICA: A comparison of single‐subject and group approaches

Y Du, EA Allen, H He, J Sui, L Wu… - Human brain …, 2016 - Wiley Online Library
Independent component analysis (ICA) has been widely applied to identify intrinsic brain
networks from fMRI data. Group ICA computes group‐level components from all data and …

Sliding window correlation analysis: Modulating window shape for dynamic brain connectivity in resting state

F Mokhtari, MI Akhlaghi, SL Simpson, G Wu… - Neuroimage, 2019 - Elsevier
The sliding window correlation (SWC) analysis is a straightforward and common approach
for evaluating dynamic functional connectivity. Despite the fact that sliding window analyses …

Surface-based analysis increases the specificity of cortical activation patterns and connectivity results

S Brodoehl, C Gaser, R Dahnke, OW Witte… - Scientific reports, 2020 - nature.com
Spatial smoothing of functional magnetic resonance imaging (fMRI) data can be performed
on volumetric images and on the extracted surface of the brain. Smoothing on the unfolded …