Challenges and promise at the interface of metaproteomics and genomics: an overview of recent progress in metaproteogenomic data analysis
H Schiebenhoefer, T Van Den Bossche… - Expert Review of …, 2019 - Taylor & Francis
Introduction: The study of microbial communities based on the combined analysis of
genomic and proteomic data–called metaproteogenomics–has gained increased research …
genomic and proteomic data–called metaproteogenomics–has gained increased research …
Current progress and critical challenges to overcome in the bioinformatics of mass spectrometry-based metaproteomics
N Miura, S Okuda - Computational and Structural Biotechnology Journal, 2023 - Elsevier
Metaproteomics is a relatively young field that has only been studied for approximately 15
years. Nevertheless, it has the potential to play a key role in disease research by elucidating …
years. Nevertheless, it has the potential to play a key role in disease research by elucidating …
Limited carbon cycling due to high-pressure effects on the deep-sea microbiome
Deep-sea microbial communities are exposed to high-pressure conditions, which has a
variable impact on prokaryotes depending on whether they are piezophilic (that is, pressure …
variable impact on prokaryotes depending on whether they are piezophilic (that is, pressure …
Unipept 4.0: functional analysis of metaproteome data
Unipept (https://unipept. ugent. be) is a web application for metaproteome data analysis, with
an initial focus on tryptic-peptide-based biodiversity analysis of MS/MS samples. Because …
an initial focus on tryptic-peptide-based biodiversity analysis of MS/MS samples. Because …
A complete and flexible workflow for metaproteomics data analysis based on MetaProteomeAnalyzer and Prophane
H Schiebenhoefer, K Schallert, BY Renard, K Trappe… - Nature protocols, 2020 - nature.com
Metaproteomics, the study of the collective protein composition of multi-organism systems,
provides deep insights into the biodiversity of microbial communities and the complex …
provides deep insights into the biodiversity of microbial communities and the complex …
Database-independent de novo metaproteomics of complex microbial communities
Metaproteomics has emerged as one of the most promising approaches for determining the
composition and metabolic functions of complete microbial communities. Conventional …
composition and metabolic functions of complete microbial communities. Conventional …
Transcriptomic-proteomic integration: A powerful synergy to elucidate the mechanisms of meat spoilage in the cold chain
Background The ubiquity and diversity of spoilage microorganisms in the cold chain have
caused incessant spoilage occurrences, resulting in significant economic losses to food …
caused incessant spoilage occurrences, resulting in significant economic losses to food …
Progress and challenges in ocean metaproteomics and proposed best practices for data sharing
Ocean metaproteomics is an emerging field enabling discoveries about marine microbial
communities and their impact on global biogeochemical processes. Recent ocean …
communities and their impact on global biogeochemical processes. Recent ocean …
Metaproteomic and metabolomic approaches for characterizing the gut microbiome
The gut microbiome has been shown to play a significant role in human healthy and
diseased states. The dynamic signaling that occurs between the host and microbiome is …
diseased states. The dynamic signaling that occurs between the host and microbiome is …
The landscape and perspectives of the human gut metaproteomics
The human gut microbiome is closely associated with human health and diseases.
Metaproteomics has emerged as a valuable tool for studying the functionality of the gut …
Metaproteomics has emerged as a valuable tool for studying the functionality of the gut …