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Predicting protein–protein interactions from the molecular to the proteome level
Identification of protein–protein interactions (PPIs) is at the center of molecular biology
considering the unquestionable role of proteins in cells. Combinatorial interactions result in …
considering the unquestionable role of proteins in cells. Combinatorial interactions result in …
A review of bioinformatics tools and web servers in different microarray platforms used in cancer research
Over the past decade, conventional lab work strategies have gradually shifted from being
limited to a laboratory setting towards a bioinformatics era to help manage and process the …
limited to a laboratory setting towards a bioinformatics era to help manage and process the …
Integration of biological networks and gene expression data using Cytoscape
Cytoscape is a free software package for visualizing, modeling and analyzing molecular and
genetic interaction networks. This protocol explains how to use Cytoscape to analyze the …
genetic interaction networks. This protocol explains how to use Cytoscape to analyze the …
Relaxation response induces temporal transcriptome changes in energy metabolism, insulin secretion and inflammatory pathways
The relaxation response (RR) is the counterpart of the stress response. Millennia-old
practices evoking the RR include meditation, yoga and repetitive prayer. Although RR …
practices evoking the RR include meditation, yoga and repetitive prayer. Although RR …
ConsensusPathDB—a database for integrating human functional interaction networks
A Kamburov, C Wierling, H Lehrach… - Nucleic acids …, 2009 - academic.oup.com
ConsensusPathDB is a database system for the integration of human functional interactions.
Current knowledge of these interactions is dispersed in more than 200 databases, each …
Current knowledge of these interactions is dispersed in more than 200 databases, each …
iRefIndex: a consolidated protein interaction database with provenance
Background Interaction data for a given protein may be spread across multiple databases.
We set out to create a unifying index that would facilitate searching for these data and that …
We set out to create a unifying index that would facilitate searching for these data and that …
MINT, the molecular interaction database: 2009 update
ABSTRACT MINT (http://mint. bio. uniroma2. it/mint) is a public repository for molecular
interactions reported in peer-reviewed journals. Since its last report, MINT has grown …
interactions reported in peer-reviewed journals. Since its last report, MINT has grown …
Integrated network analysis platform for protein-protein interactions
J Wu, T Vallenius, K Ovaska, J Westermarck… - Nature …, 2009 - nature.com
There is an increasing demand for network analysis of protein-protein interactions (PPIs).
We introduce a web-based protein interaction network analysis platform (PINA), which …
We introduce a web-based protein interaction network analysis platform (PINA), which …
Why not?
A Chapman, HV Jagadish - Proceedings of the 2009 ACM SIGMOD …, 2009 - dl.acm.org
As humans, we have expectations for the results of any action, eg we expect at least one
student to be returned when we query a university database for student records. When these …
student to be returned when we query a university database for student records. When these …
Making database systems usable
HV Jagadish, A Chapman, A Elkiss… - Proceedings of the …, 2007 - dl.acm.org
Database researchers have striven to improve the capability of a database in terms of both
performance and functionality. We assert that the usability of a database is as important as …
performance and functionality. We assert that the usability of a database is as important as …