Deep learning in clinical natural language processing: a methodical review

S Wu, K Roberts, S Datta, J Du, Z Ji, Y Si… - Journal of the …, 2020 - academic.oup.com
Objective This article methodically reviews the literature on deep learning (DL) for natural
language processing (NLP) in the clinical domain, providing quantitative analysis to answer …

Clinical information retrieval: a literature review

S Sivarajkumar, HA Mohammad, D Oniani… - Journal of healthcare …, 2024 - Springer
Clinical information retrieval (IR) plays a vital role in modern healthcare by facilitating
efficient access and analysis of medical literature for clinicians and researchers. This …

[HTML][HTML] Disease concept-embedding based on the self-supervised method for medical information extraction from electronic health records and disease retrieval …

YP Chen, YH Lo, F Lai, CH Huang - Journal of Medical Internet Research, 2021 - jmir.org
Background The electronic health record (EHR) contains a wealth of medical information. An
organized EHR can greatly help doctors treat patients. In some cases, only limited patient …

[HTML][HTML] Exploring a learning-to-rank approach to enhance the Retrieval Augmented Generation (RAG)-based electronic medical records search engines

C Ye - Informatics and Health, 2024 - Elsevier
Background This study addresses the challenge of enhancing Retrieval Augmented
Generation (RAG) search engines for electronic medical records (EMR) by learning users' …

Development of a lexicon for pain

J Chaturvedi, A Mascio, SU Velupillai… - Frontiers in digital …, 2021 - frontiersin.org
Pain has been an area of growing interest in the past decade and is known to be associated
with mental health issues. Due to the ambiguous nature of how pain is described in text, it …

Leveraging medical context to recommend semantically similar terms for chart reviews

C Ye, BA Malin, D Fabbri - BMC medical informatics and decision making, 2021 - Springer
Background Information retrieval (IR) help clinicians answer questions posed to large
collections of electronic medical records (EMRs), such as how best to identify a patient's …

INTEGRO: An algorithm for data-integration and disease-gene association

P Cinaglia, PH Guzzi, P Veltri - 2018 IEEE international …, 2018 - ieeexplore.ieee.org
Biological information are continuously analyzed and collected by health-informatics tools
for knowledge extraction. For instance, Next Generation Sequencing (NGS) and Micro Array …

DeepSuggest: Using neural networks to suggest related keywords for a comprehensive search of clinical notes

S Moosavinasab, E Sezgin, H Sun, J Hoffman… - ACI …, 2021 - thieme-connect.com
Objective A large amount of clinical data are stored in clinical notes that frequently contain
spelling variations, typos, local practice-generated acronyms, synonyms, and informal …

[HTML][HTML] Next generation of electronic medical record search engines to support chart reviews: A systematic user study and future research direction

C Ye, D Fabbri - Journal of Economy and Technology, 2024 - Elsevier
Objective Little research has been done on the user-centered document ranking approach,
especially in a crowdsourcing chart review environment. As the starting point of designing …

Evaluating Entity Retrieval in Electronic Health Records: a Semantic Gap Perspective

Z Zhao, H Yuan, J Liu, H Chen, H Ying, S Zhou… - arxiv preprint arxiv …, 2025 - arxiv.org
Entity retrieval plays a crucial role in the utilization of Electronic Health Records (EHRs) and
is applied across a wide range of clinical practices. However, a comprehensive evaluation of …