NCBI Taxonomy: a comprehensive update on curation, resources and tools
Abstract The National Center for Biotechnology Information (NCBI) Taxonomy includes
organism names and classifications for every sequence in the nucleotide and protein …
organism names and classifications for every sequence in the nucleotide and protein …
Soil protists: a fertile frontier in soil biology research
Protists include all eukaryotes except plants, fungi and animals. They are an essential, yet
often forgotten, component of the soil microbiome. Method developments have now …
often forgotten, component of the soil microbiome. Method developments have now …
Revisions to the classification, nomenclature, and diversity of eukaryotes
This revision of the classification of eukaryotes follows that of Adl et al., 2012 [J. Euk.
Microbiol. 59 (5)] and retains an emphasis on protists. Changes since have improved the …
Microbiol. 59 (5)] and retains an emphasis on protists. Changes since have improved the …
Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems
Protists dominate eukaryotic diversity and play key functional roles in all ecosystems,
particularly by catalyzing carbon and nutrient cycling. To date, however, a comparative …
particularly by catalyzing carbon and nutrient cycling. To date, however, a comparative …
Protists: puppet masters of the rhizosphere microbiome
The rhizosphere microbiome is a central determinant of plant performance. Microbiome
assembly has traditionally been investigated from a bottom-up perspective, assessing how …
assembly has traditionally been investigated from a bottom-up perspective, assessing how …
[HTML][HTML] EukProt: a database of genome-scale predicted proteins across the diversity of eukaryotes
EukProt is a database of published and publicly available predicted protein sets selected to
represent the breadth of eukaryotic diversity, currently including 993 species from all major …
represent the breadth of eukaryotic diversity, currently including 993 species from all major …
Soil protist communities form a dynamic hub in the soil microbiome
Soil microbes are essential for soil fertility. However, most studies focus on bacterial and/or
fungal communities, while the top-down drivers of this microbiome composition, protists …
fungal communities, while the top-down drivers of this microbiome composition, protists …
The European nucleotide archive in 2019
C Amid, BTF Alako… - Nucleic acids …, 2020 - academic.oup.com
Abstract The European Nucleotide Archive (ENA, https://www. ebi. ac. uk/ena) at the
European Molecular Biology Laboratory's European Bioinformatics Institute provides open …
European Molecular Biology Laboratory's European Bioinformatics Institute provides open …
Metagenomics approaches for the detection and surveillance of emerging and recurrent plant pathogens
Globalization has a dramatic effect on the trade and movement of seeds, fruits and
vegetables, with a corresponding increase in economic losses caused by the introduction of …
vegetables, with a corresponding increase in economic losses caused by the introduction of …
Perspectives from ten years of protist studies by high‐throughput metabarcoding
During the last decade, high‐throughput metabarcoding became routine for analyzing
protistan diversity and distributions in nature. Amid a multitude of exciting findings, scientists …
protistan diversity and distributions in nature. Amid a multitude of exciting findings, scientists …