Advancing computer-aided drug discovery (CADD) by big data and data-driven machine learning modeling
Highlights•Drug discovery has been advanced to a big data era with a large amount of
public data sources available.•Ten V features (volume, velocity, variety, veracity, validity …
public data sources available.•Ten V features (volume, velocity, variety, veracity, validity …
Escherichia coli as a host for metabolic engineering
Over the past century, Escherichia coli has become one of the best studied organisms on
earth. Features such as genetic tractability, favorable growth conditions, well characterized …
earth. Features such as genetic tractability, favorable growth conditions, well characterized …
[HTML][HTML] Investigating mitochondrial redox state using NADH and NADPH autofluorescence
The redox states of the NAD and NADP pyridine nucleotide pools play critical roles in
defining the activity of energy producing pathways, in driving oxidative stress and in …
defining the activity of energy producing pathways, in driving oxidative stress and in …
Separating NADH and NADPH fluorescence in live cells and tissues using FLIM
NAD is a key determinant of cellular energy metabolism. In contrast, its phosphorylated form,
NADP, plays a central role in biosynthetic pathways and antioxidant defence. The reduced …
NADP, plays a central role in biosynthetic pathways and antioxidant defence. The reduced …
Glycolytic strategy as a tradeoff between energy yield and protein cost
Contrary to the textbook portrayal of glycolysis as a single pathway conserved across all
domains of life, not all sugar-consuming organisms use the canonical Embden–Meyerhoff …
domains of life, not all sugar-consuming organisms use the canonical Embden–Meyerhoff …
eQuilibrator—the biochemical thermodynamics calculator
The laws of thermodynamics constrain the action of biochemical systems. However,
thermodynamic data on biochemical compounds can be difficult to find and is cumbersome …
thermodynamic data on biochemical compounds can be difficult to find and is cumbersome …
Emergence of robust growth laws from optimal regulation of ribosome synthesis
M Scott, S Klumpp, EM Mateescu… - Molecular systems biology, 2014 - embopress.org
Bacteria must constantly adapt their growth to changes in nutrient availability; yet despite
large‐scale changes in protein expression associated with sensing, adaptation, and …
large‐scale changes in protein expression associated with sensing, adaptation, and …
Transformation of biomass into commodity chemicals using enzymes or cells
AJJ Straathof - Chemical reviews, 2014 - ACS Publications
Biomass can be classified broadly as all the matter on the earth's surface of recent biological
origin. 1 Biomass includes plant materials such as trees, grasses, agricultural crops, algal …
origin. 1 Biomass includes plant materials such as trees, grasses, agricultural crops, algal …
[HTML][HTML] The BRENDA enzyme information system–From a database to an expert system
Enzymes, representing the largest and by far most complex group of proteins, play an
essential role in all processes of life, including metabolism, gene expression, cell division …
essential role in all processes of life, including metabolism, gene expression, cell division …
How fast‐growing bacteria robustly tune their ribosome concentration to approximate growth‐rate maximization
Maximization of growth rate is an important fitness strategy for bacteria. Bacteria can achieve
this by expressing proteins at optimal concentrations, such that resources are not wasted …
this by expressing proteins at optimal concentrations, such that resources are not wasted …