[HTML][HTML] The future of biotic indices in the ecogenomic era: Integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems
The bioassessment of aquatic ecosystems is currently based on various biotic indices that
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance
Trap-based surveillance strategies are widely used for monitoring of invasive insect species,
aiming to detect newly arrived exotic taxa as well as track the population levels of …
aiming to detect newly arrived exotic taxa as well as track the population levels of …
Why we need sustainable networks bridging countries, disciplines, cultures and generations for aquatic biomonitoring 2.0: a perspective derived from the DNAqua-Net …
Aquatic biomonitoring has become an essential task in Europe and many other regions as a
consequence of strong anthropogenic pressures affecting the health of lakes, rivers, oceans …
consequence of strong anthropogenic pressures affecting the health of lakes, rivers, oceans …
Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples
New applications of DNA and RNA sequencing are expanding the field of biodiversity
discovery and ecological monitoring, yet questions remain regarding precision and …
discovery and ecological monitoring, yet questions remain regarding precision and …
Comparison of destructive and nondestructive DNA extraction methods for the metabarcoding of arthropod bulk samples
DNA metabarcoding is routinely used for biodiversity assessment, in particular targeting
highly diverse groups for which limited taxonomic expertise is available. Various protocols …
highly diverse groups for which limited taxonomic expertise is available. Various protocols …
DNA metabarcoding reveals the complex and hidden responses of chironomids to multiple stressors
Background Chironomids, or non-biting midges, often dominate stream invertebrate
communities in terms of biomass, abundance, and species richness and play an important …
communities in terms of biomass, abundance, and species richness and play an important …
Target enrichment of metazoan mitochondrial DNA with hybridization capture probes
High-throughput DNA sequencing studies allow rapid and widescale investigations into
complex assemblages of organisms that would otherwise remain infeasible. Recently …
complex assemblages of organisms that would otherwise remain infeasible. Recently …
Enhancing DNA metabarcoding performance and applicability with bait capture enrichment and DNA from conservative ethanol
M Gauthier, L Konecny‐Dupré… - Molecular Ecology …, 2020 - Wiley Online Library
Metabarcoding is often presented as an alternative identification tool to compensate for
coarse taxonomic resolution and misidentification encountered with traditional …
coarse taxonomic resolution and misidentification encountered with traditional …
Soil nematode community profiling using reference-free mito-metagenomics
Nematodes are ubiquitous and diverse components of soil ecosystems worldwide. The 18S-
based metabarcoding is known to have low species-level resolution and introduce bias in …
based metabarcoding is known to have low species-level resolution and introduce bias in …
[PDF][PDF] Combining NCBI and BOLD databases for OTU assignment in metabarcoding and metagenomic datasets: The BOLD_NCBI _Merger
Metabarcoding and metagenomic approaches are becoming routine techniquesfor use in
biodiversity assessment and in ecological studies. The assignment of taxonomic information …
biodiversity assessment and in ecological studies. The assignment of taxonomic information …