Using haplotype information for conservation genomics

M Leitwein, M Duranton, Q Rougemont… - Trends in ecology & …, 2020 - cell.com
The particular combinations of alleles that define haplotypes along individual chromosomes
can be determined with increasing ease and accuracy by using current sequencing …

Integrative rDNAomics—importance of the oldest repetitive fraction of the eukaryote genome

R Symonová - Genes, 2019 - mdpi.com
Nuclear ribosomal RNA (rRNA) genes represent the oldest repetitive fraction universal to all
eukaryotic genomes. Their deeply anchored universality and omnipresence during …

Genome assembly, structural variants, and genetic differentiation between lake whitefish young species pairs (Coregonus sp.) with long and short reads

C Mérot, KSR Stenløkk, C Venney, M Laporte… - Molecular …, 2023 - Wiley Online Library
Nascent pairs of ecologically differentiated species offer an opportunity to get a better
glimpse at the genetic architecture of speciation. Of particular interest is our recent ability to …

Beyond speciation genes: an overview of genome stability in evolution and speciation

AM Dion-Côté, DA Barbash - Current opinion in genetics & development, 2017 - Elsevier
Highlights•Genome stability is intimately linked to speciation and evolution.•Genome stability
is a complex trait.•Genome instability may be a widespread cause of hybrid incompatibility.• …

Genetic causes and consequences of sympatric morph divergence in Salmonidae: a search for mechanisms

SJ Salisbury, DE Ruzzante - Annual Review of Animal …, 2022 - annualreviews.org
Repeatedly and recently evolved sympatric morphs exhibiting consistent phenotypic
differences provide natural experimental replicates of speciation. Because such morphs are …

DNA methylation reprogramming, TE derepression, and postzygotic isolation of nascent animal species

M Laporte, J Le Luyer, C Rougeux, AM Dion-Côté… - Science …, 2019 - science.org
The genomic shock hypothesis stipulates that the stress associated with divergent genome
admixture can cause transposable element (TE) derepression, which could act as a …

Genome evolution, structural rearrangements and speciation

PGD Feulner, R De‐Kayne - Journal of evolutionary biology, 2017 - academic.oup.com
Ravinet et al.(2017) focus their review on the genomic landscape of speciation, in particular
on the identification of barrier loci. However, here we wish to direct attention towards the …

Rapid buildup of sympatric species diversity in Alpine whitefish

CJ Doenz, D Bittner, P Vonlanthen… - Ecology and …, 2018 - Wiley Online Library
Adaptive radiations in postglacial fish offer excellent settings to study the evolutionary
mechanisms involved in the rapid buildup of sympatric species diversity from a single …

Transgenerationally precipitated meiotic chromosome instability fuels rapid karyotypic evolution and phenotypic diversity in an artificially constructed allotetraploid …

X Gou, Y Bian, A Zhang, H Zhang… - Molecular biology …, 2018 - academic.oup.com
Although a distinct karyotype with defined chromosome number and structure characterizes
each biological species, it is intrinsically labile. Polyploidy or whole-genome duplication has …

[HTML][HTML] Vertebrate genome evolution in the light of fish cytogenomics and rDNAomics

R Symonová, WM Howell - Genes, 2018 - mdpi.com
To understand the cytogenomic evolution of vertebrates, we must first unravel the complex
genomes of fishes, which were the first vertebrates to evolve and were ancestors to all other …