AttentionMGT-DTA: A multi-modal drug-target affinity prediction using graph transformer and attention mechanism

H Wu, J Liu, T Jiang, Q Zou, S Qi, Z Cui, P Tiwari… - Neural Networks, 2024 - Elsevier
The accurate prediction of drug-target affinity (DTA) is a crucial step in drug discovery and
design. Traditional experiments are very expensive and time-consuming. Recently, deep …

Graph pooling in graph neural networks: methods and their applications in omics studies

Y Wang, W Hou, N Sheng, Z Zhao, J Liu… - Artificial Intelligence …, 2024 - Springer
Graph neural networks (GNNs) process the graph-structured data using neural networks
and have proven successful in various graph processing tasks. Currently, graph pooling …

Advances in Protein-Ligand Binding Affinity Prediction via Deep Learning: A Comprehensive Study of Datasets, Data Preprocessing Techniques, and Model …

GA Abdelkader, JD Kim - Current drug targets, 2024 - benthamdirect.com
Background Drug discovery is a complex and expensive procedure involving several timely
and costly phases through which new potential pharmaceutical compounds must pass to get …

Modality-DTA: multimodality fusion strategy for drug–target affinity prediction

X Yang, Z Niu, Y Liu, B Song, W Lu… - … /ACM Transactions on …, 2022 - ieeexplore.ieee.org
Prediction of the drug–target affinity (DTA) plays an important role in drug discovery. Existing
deep learning methods for DTA prediction typically leverage a single modality, namely …

[HTML][HTML] AI's role in pharmaceuticals: assisting drug design from protein interactions to drug development

S Bechelli, J Delhommelle - Artificial Intelligence Chemistry, 2024 - Elsevier
Develo** new pharmaceutical compounds is a lengthy, costly, and intensive process. In
recent years, the development of Artificial Intelligence (AI), Machine Learning (ML), and …

A comprehensive review of the recent advances on predicting drug-target affinity based on deep learning

X Zeng, SJ Li, SQ Lv, ML Wen, Y Li - Frontiers in Pharmacology, 2024 - frontiersin.org
Accurate calculation of drug-target affinity (DTA) is crucial for various applications in the
pharmaceutical industry, including drug screening, design, and repurposing. However …

Exploring the potential of compound–protein complex structure-free models in virtual screening using BlendNet

S Seo, H Kim, J Lee, S Choi, S Park - Briefings in Bioinformatics, 2025 - academic.oup.com
Identifying new compounds that interact with a target is a crucial time-limiting step in the
initial phases of drug discovery. Compound–protein complex structure-based affinity …

TCRcost: a deep learning model utilizing TCR 3D structure for enhanced of TCR–peptide binding

F Li, X Qian, X Zhu, X Lai, X Zhang, J Wang - Frontiers in Genetics, 2024 - frontiersin.org
Introduction Predicting TCR–peptide binding is a complex and significant computational
problem in systems immunology. During the past decade, a series of computational methods …

Advancing Bioactivity Prediction through Molecular Docking and Self-Attention

Y Yin, HYI Lam, Y Mu, HY Li… - IEEE Journal of …, 2024 - ieeexplore.ieee.org
Bioactivity refers to the ability of a substance to induce biological effects within living
systems, often describing the influence of molecules, drugs, or chemicals on organisms. In …

[HTML][HTML] A review of deep learning methods for ligand based drug virtual screening

H Wu, J Liu, R Zhang, Y Lu, G Cui, Z Cui, Y Ding - Fundamental Research, 2024 - Elsevier
Drug discovery is costly and time consuming, and modern drug discovery endeavors are
progressively reliant on computational methodologies, aiming to mitigate temporal and …