A guide to antigen processing and presentation

N Pishesha, TJ Harmand, HL Ploegh - Nature Reviews Immunology, 2022 - nature.com
Antigen processing and presentation are the cornerstones of adaptive immunity. B cells
cannot generate high-affinity antibodies without T cell help. CD4+ T cells, which provide …

Present yourself! By MHC class I and MHC class II molecules

KL Rock, E Reits, J Neefjes - Trends in immunology, 2016 - cell.com
Since the discovery of MHC molecules, it has taken 40 years to arrive at a coherent picture
of how MHC class I and MHC class II molecules really work. This is a story of the proteases …

Most non-canonical proteins uniquely populate the proteome or immunopeptidome

MVR Cuevas, MP Hardy, J Hollý, É Bonneil, C Durette… - Cell reports, 2021 - cell.com
Combining RNA sequencing, ribosome profiling, and mass spectrometry, we elucidate the
contribution of non-canonical translation to the proteome and major histocompatibility …

Pathways of antigen processing

JS Blum, PA Wearsch… - Annual review of …, 2013 - annualreviews.org
T cell recognition of antigen-presenting cells depends on their expression of a spectrum of
peptides bound to major histocompatibility complex class I (MHC-I) and class II (MHC-II) …

Towards a systems understanding of MHC class I and MHC class II antigen presentation

J Neefjes, MLM Jongsma, P Paul… - Nature reviews …, 2011 - nature.com
The molecular details of antigen processing and presentation by MHC class I and class II
molecules have been studied extensively for almost three decades. Although the basic …

A critical analysis of codon optimization in human therapeutics

VP Mauro, SA Chappell - Trends in molecular medicine, 2014 - cell.com
Codon optimization describes gene engineering approaches that use synonymous codon
changes to increase protein production. Applications for codon optimization include …

Deubiquitinating enzymes and the proteasome regulate preferential sets of ubiquitin substrates

F Trulsson, V Akimov, M Robu, N van Overbeek… - Nature …, 2022 - nature.com
The ubiquitin-proteasome axis has been extensively explored at a system-wide level, but the
impact of deubiquitinating enzymes (DUBs) on the ubiquitinome remains largely unknown …

Radiation modulates the peptide repertoire, enhances MHC class I expression, and induces successful antitumor immunotherapy

EA Reits, JW Hodge, CA Herberts… - Journal of Experimental …, 2006 - rupress.org
Radiotherapy is one of the most successful cancer therapies. Here the effect of irradiation on
antigen presentation by MHC class I molecules was studied. Cell surface expression of …

Quality control in the endoplasmic reticulum

L Ellgaard, A Helenius - Nature reviews Molecular cell biology, 2003 - nature.com
The endoplasmic reticulum (ER) has a quality-control system for'proof-reading'newly
synthesized proteins, so that only native conformers reach their final destinations. Non …

Protein aggregation and aggregate toxicity: new insights into protein folding, misfolding diseases and biological evolution

M Stefani, CM Dobson - Journal of molecular medicine, 2003 - Springer
The deposition of proteins in the form of amyloid fibrils and plaques is the characteristic
feature of more than 20 degenerative conditions affecting either the central nervous system …