The dark matter of the cancer genome: aberrations in regulatory elements, untranslated regions, splice sites, non‐coding RNA and synonymous mutations

S Diederichs, L Bartsch, JC Berkmann… - EMBO molecular …, 2016 - embopress.org
Cancer is a disease of the genome caused by oncogene activation and tumor suppressor
gene inhibition. Deep sequencing studies including large consortia such as TCGA and …

[HTML][HTML] Epigenetic modulation of DNA methylation by nutrition and its mechanisms in animals

N Zhang - Animal nutrition, 2015 - Elsevier
It is well known that phenotype of animals may be modified by the nutritional modulations
through epigenetic mechanisms. As a key and central component of epigenetic network …

Comprehensive analysis of histone post-translational modifications in mouse and human male germ cells

LJ Luense, X Wang, SB Schon, AH Weller… - Epigenetics & …, 2016 - Springer
Background During the process of spermatogenesis, male germ cells undergo dramatic
chromatin reorganization, whereby most histones are replaced by protamines, as part of the …

Tissue-specific Grb10/Ddc insulator drives allelic architecture for cardiac development

AM Juan, YH Foong, JL Thorvaldsen, Y Lan, NA Leu… - Molecular cell, 2022 - cell.com
Allele-specific expression of imprinted gene clusters is governed by gametic DNA
methylation at master regulators called imprinting control regions (ICRs). Non-gametic or …

Maternal vitamin D depletion alters DNA methylation at imprinted loci in multiple generations

J Xue, SA Schoenrock, W Valdar, LM Tarantino… - Clinical …, 2016 - Springer
Background Environmental perturbation of epigenetic mechanisms is linked to a growing
number of diseases. Characterizing the role environmental factors play in modifying the …

CDKN1C mutations: two sides of the same coin

T Eggermann, G Binder, F Brioude, ER Maher… - Trends in molecular …, 2014 - cell.com
Cyclin-dependent kinase (CDK)-inhibitor 1C (CDKN1C) negatively regulates cellular
proliferation and it has been shown that loss-of-function mutations in the imprinted CDKN1C …

Alteration in expression and methylation of IGF2/H19 in placenta and umbilical cord blood are associated with macrosomia exposed to intrauterine hyperglycemia

R Su, C Wang, H Feng, L Lin, X Liu, Y Wei, H Yang - PloS one, 2016 - journals.plos.org
Objective Macrosomia is one of the most common complications in gestational diabetes
mellitus. Insulin-like growth factor 2 and H19 are two of the imprinted candidate genes that …

Modeling human epigenetic disorders in mice: Beckwith-Wiedemann syndrome and Silver-Russell syndrome

S Chang, MS Bartolomei - Disease models & mechanisms, 2020 - journals.biologists.com
Genomic imprinting, a phenomenon in which the two parental alleles are regulated
differently, is observed in mammals, marsupials and a few other species, including seed …

Exploring chromatin structural roles of non-coding RNAs at imprinted domains

D Llères, Y Imaizumi, R Feil - Biochemical Society Transactions, 2021 - portlandpress.com
Different classes of non-coding RNA (ncRNA) influence the organization of chromatin.
Imprinted gene domains constitute a paradigm for exploring functional long ncRNAs …

Differential 3D chromatin organization and gene activity in genomic imprinting

D Noordermeer, R Feil - Current opinion in genetics & development, 2020 - Elsevier
Genomic imprinting gives rise to parent-of-origin dependent allelic gene expression. Most
imprinted genes cluster in domains where differentially methylated regions (DMRs) …