Metagenomic analyses: past and future trends

C Simon, R Daniel - Applied and environmental microbiology, 2011 - Am Soc Microbiol
Metagenomics has revolutionized microbiology by paving the way for a cultivation-
independent assessment and exploitation of microbial communities present in complex …

[HTML][HTML] Stressed out: Bacterial response to high salinity using compatible solute biosynthesis and uptake systems, lessons from Vibrionaceae

GJ Gregory, EF Boyd - Computational and structural biotechnology journal, 2021 - Elsevier
Bacteria have evolved mechanisms that allow them to adapt to changes in osmolarity and
some species have adapted to live optimally in high salinity environments such as in the …

Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation

PM Rosado, DCA Leite, GAS Duarte… - The ISME …, 2019 - academic.oup.com
Although the early coral reef-bleaching warning system (NOAA/USA) is established, there is
no feasible treatment that can minimize temperature bleaching and/or disease impacts on …

Bacterial catabolism of dimethylsulfoniopropionate (DMSP)

CR Reisch, MA Moran, WB Whitman - Frontiers in microbiology, 2011 - frontiersin.org
Dimethylsulfoniopropionate (DMSP) is a metabolite produced primarily by marine
phytoplankton and is the main precursor to the climatically important gas dimethylsulfide …

Quantitative analysis of a deeply sequenced marine microbial metatranscriptome

SM Gifford, S Sharma, JM Rinta-Kanto… - The ISME …, 2011 - academic.oup.com
The potential of metatranscriptomic sequencing to provide insights into the environmental
factors that regulate microbial activities depends on how fully the sequence libraries capture …

Genomic insights into bacterial DMSP transformations

MA Moran, CR Reisch, RP Kiene… - Annual review of …, 2012 - annualreviews.org
Genomic and functional genomic methods applied to both model organisms and natural
communities have rapidly advanced understanding of bacterial dimethylsulfoniopropionate …

Fertilizer N application rate impacts plant-soil feedback in a sanqi production system

W Wei, M Yang, Y Liu, H Huang, C Ye, J Zheng… - Science of the Total …, 2018 - Elsevier
Replant failure caused by negative plant-soil feedback (NPFS) in agricultural ecosystems is
a critical factor restricting the development of sustainable agriculture. Soil nutrient availability …

Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans

ZJ Teng, QL Qin, W Zhang, J Li, HH Fu, P Wang, M Lan… - Microbiome, 2021 - Springer
Background Dimethyl sulfide (DMS) is the dominant volatile organic sulfur in global oceans.
The predominant source of oceanic DMS is the cleavage of dimethylsulfoniopropionate …

Characterization of bacteria in biopsies of colon and stools by high throughput sequencing of the V2 region of bacterial 16S rRNA gene in human

Y Momozawa, V Deffontaine, E Louis, JF Medrano - PloS one, 2011 - journals.plos.org
Background The characterization of the human intestinal microflora and their interactions
with the host have been identified as key components in the study of intestinal disorders …

Coordinated gene expression between Trichodesmium and its microbiome over day–night cycles in the North Pacific Subtropical Gyre

KR Frischkorn, ST Haley, ST Dyhrman - The ISME journal, 2018 - academic.oup.com
Trichodesmium is a widespread, N2 fixing marine cyanobacterium that drives inputs of
newly fixed nitrogen and carbon into the oligotrophic ecosystems where it occurs. Colonies …