The use of genome-level characters for phylogenetic reconstruction
JL Boore - Trends in Ecology & Evolution, 2006 - cell.com
Now that large-scale genome-sequencing projects are sampling many organismal lineages,
it is becoming possible to compare large data sets of not only DNA and protein sequences …
it is becoming possible to compare large data sets of not only DNA and protein sequences …
Pseudogenes and their genome-wide prediction in plants
Pseudogenes are paralogs generated from ancestral functional genes (parents) during
genome evolution, which contain critical defects in their sequences, such as lacking a …
genome evolution, which contain critical defects in their sequences, such as lacking a …
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica
cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA …
cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA …
Detecting small plant peptides using SPADA (small peptide alignment discovery application)
Background Small peptides encoded as one-or two-exon genes in plants have recently
been shown to affect multiple aspects of plant development, reproduction and defense …
been shown to affect multiple aspects of plant development, reproduction and defense …
A High-Quality Haplotype-Resolved Genome of Common Bermudagrass (Cynodon dactylon L.) Provides Insights Into Polyploid Genome Stability and Prostrate …
Common bermudagrass (Cynodon dactylon L.) is an important perennial warm-season
turfgrass species with great economic value. However, the reference genome is still deficient …
turfgrass species with great economic value. However, the reference genome is still deficient …
Genetic dissection of intermated recombinant inbred lines using a new genetic map of maize
Y Fu, TJ Wen, YI Ronin, HD Chen, L Guo, DI Mester… - Genetics, 2006 - academic.oup.com
A new genetic map of maize, ISU–IBM Map4, that integrates 2029 existing markers with
1329 new indel polymorphism (IDP) markers has been developed using intermated …
1329 new indel polymorphism (IDP) markers has been developed using intermated …
Comprehensive analysis of 1R-and 2R-MYBs reveals novel genic and protein features, complex organisation, selective expansion and insights into evolutionary …
M Lal, E Bhardwaj, N Chahar, S Yadav… - Functional & Integrative …, 2022 - Springer
Myeloblastosis (MYB) family, the largest plant transcription factor family, has been
subcategorised based on the number and type of repeats in the MYB domain. In spite of …
subcategorised based on the number and type of repeats in the MYB domain. In spite of …
Genome-wide detection of serpentine receptor-like proteins in malaria parasites
Serpentine receptors comprise a large family of membrane receptors distributed over
diverse organisms, such as bacteria, fungi, plants and all metazoans. However, the …
diverse organisms, such as bacteria, fungi, plants and all metazoans. However, the …
Evidence-based gene models for structural and functional annotations of the oil palm genome
Background Oil palm is an important source of edible oil. The importance of the crop, as well
as its long breeding cycle (10-12 years) has led to the sequencing of its genome in 2013 to …
as its long breeding cycle (10-12 years) has led to the sequencing of its genome in 2013 to …
Nucleotide patterns aiding in prediction of eukaryotic promoters
Computational analysis of promoters is hindered by the complexity of their architecture. In
less studied genomes with complex organization, false positive promoter predictions are …
less studied genomes with complex organization, false positive promoter predictions are …