Machine learning approaches and databases for prediction of drug–target interaction: a survey paper

M Bagherian, E Sabeti, K Wang… - Briefings in …, 2021 - academic.oup.com
The task of predicting the interactions between drugs and targets plays a key role in the
process of drug discovery. There is a need to develop novel and efficient prediction …

Design of efficient computational workflows for in silico drug repurposing

Q Vanhaelen, P Mamoshina, AM Aliper, A Artemov… - Drug Discovery …, 2017 - Elsevier
Highlights•Conceptual foundations of the drug repurposing paradigm are
reviewed.•Description of the technological trends behind the raise of in silico …

Deep-learning-based drug–target interaction prediction

M Wen, Z Zhang, S Niu, H Sha, R Yang… - Journal of proteome …, 2017 - ACS Publications
Identifying interactions between known drugs and targets is a major challenge in drug
repositioning. In silico prediction of drug–target interaction (DTI) can speed up the expensive …

Prediction of drug-target interactions and drug repositioning via network-based inference

F Cheng, C Liu, J Jiang, W Lu, W Li, G Liu… - PLoS computational …, 2012 - journals.plos.org
Drug-target interaction (DTI) is the basis of drug discovery and design. It is time consuming
and costly to determine DTI experimentally. Hence, it is necessary to develop computational …

Drug–target interaction predication via multi-channel graph neural networks

Y Li, G Qiao, K Wang, G Wang - Briefings in Bioinformatics, 2022 - academic.oup.com
Drug–target interaction (DTI) is an important step in drug discovery. Although there are many
methods for predicting drug targets, these methods have limitations in using discrete or …

Supervised graph co-contrastive learning for drug–target interaction prediction

Y Li, G Qiao, X Gao, G Wang - Bioinformatics, 2022 - academic.oup.com
Abstract Motivation Identification of Drug–Target Interactions (DTIs) is an essential step in
drug discovery and repositioning. DTI prediction based on biological experiments is time …

A learning-based method for drug-target interaction prediction based on feature representation learning and deep neural network

J Peng, J Li, X Shang - BMC bioinformatics, 2020 - Springer
Background Drug-target interaction prediction is of great significance for narrowing down the
scope of candidate medications, and thus is a vital step in drug discovery. Because of the …

ChemoPy: freely available python package for computational biology and chemoinformatics

DS Cao, QS Xu, QN Hu, YZ Liang - Bioinformatics, 2013 - academic.oup.com
Motivation: Molecular representation for small molecules has been routinely used in
QSAR/SAR, virtual screening, database search, ranking, drug ADME/T prediction and other …

iACP-GAEnsC: Evolutionary genetic algorithm based ensemble classification of anticancer peptides by utilizing hybrid feature space

S Akbar, M Hayat, M Iqbal, MA Jan - Artificial intelligence in medicine, 2017 - Elsevier
Cancer is a fatal disease, responsible for one-quarter of all deaths in developed countries.
Traditional anticancer therapies such as, chemotherapy and radiation, are highly expensive …

Drug–target interaction prediction through domain-tuned network-based inference

S Alaimo, A Pulvirenti, R Giugno, A Ferro - Bioinformatics, 2013 - academic.oup.com
Motivation: The identification of drug–target interaction (DTI) represents a costly and time-
consuming step in drug discovery and design. Computational methods capable of predicting …