ToxinPred 3.0: An improved method for predicting the toxicity of peptides

AS Rathore, S Choudhury, A Arora, P Tijare… - Computers in Biology …, 2024 - Elsevier
Toxicity emerges as a prominent challenge in the design of therapeutic peptides, causing
the failure of numerous peptides during clinical trials. In 2013, our group developed …

Prediction of antiviral peptides using transform evolutionary & SHAP analysis based descriptors by incorporation with ensemble learning strategy

S Akbar, F Ali, M Hayat, A Ahmad, S Khan… - … and Intelligent Laboratory …, 2022 - Elsevier
Viral diseases are a major health concern in the last few years. Antiviral peptides (AVPs)
belong to a type of antimicrobial peptides (AMPs) that have the high potential to defend the …

Signal peptide efficiency: from high-throughput data to prediction and explanation

S Grasso, V Dabene, MMWB Hendriks… - ACS synthetic …, 2023 - ACS Publications
The passage of proteins across biological membranes via the general secretory (Sec)
pathway is a universally conserved process with critical functions in cell physiology and …

Advancing Peptide-Based Cancer Therapy with AI: In-Depth Analysis of State-of-the-Art AI Models

S Bhattarai, H Tayara, KT Chong - Journal of Chemical …, 2024 - ACS Publications
Anticancer peptides (ACPs) play a vital role in selectively targeting and eliminating cancer
cells. Evaluating and comparing predictions from various machine learning (ML) and deep …

Accelerating the discovery of anticancer peptides through deep forest architecture with deep graphical representation

L Yao, W Li, Y Zhang, J Deng, Y Pang… - International Journal of …, 2023 - mdpi.com
Cancer is one of the leading diseases threatening human life and health worldwide. Peptide-
based therapies have attracted much attention in recent years. Therefore, the precise …

PLMACPred prediction of anticancer peptides based on protein language model and wavelet denoising transformation

M Arif, S Musleh, H Fida, T Alam - Scientific Reports, 2024 - nature.com
Anticancer peptides (ACPs) perform a promising role in discovering anti-cancer drugs. The
growing research on ACPs as therapeutic agent is increasing due to its minimal side effects …

LBCEPred: a machine learning model to predict linear B-cell epitopes

W Alghamdi, M Attique, E Alzahrani… - Briefings in …, 2022 - academic.oup.com
B-cell epitopes have the capability to recognize and attach to the surface of antigen
receptors to stimulate the immune system against pathogens. Identification of B-cell epitopes …

[HTML][HTML] StackDPPred: Multiclass prediction of defensin peptides using stacked ensemble learning with optimized features

M Arif, S Musleh, A Ghulam, H Fida, Y Alqahtani… - Methods, 2024 - Elsevier
Host defense or antimicrobial peptides (AMPs) are promising candidates for protecting host
against microbial pathogens for example bacteria, virus, fungi, yeast. Defensins are the type …

Applications of peptide-based nanomaterials in targeting cancer therapy

B Sun, L Zhang, M Li, X Wang, W Wang - Biomaterials Science, 2024 - pubs.rsc.org
To meet the demand for precision medicine, researchers are committed to develo** novel
strategies to reduce systemic toxicity and side effects in cancer treatment. Targeting peptides …

ME-ACP: multi-view neural networks with ensemble model for identification of anticancer peptides

G Feng, H Yao, C Li, R Liu, R Huang, X Fan… - Computers in Biology …, 2022 - Elsevier
Cancer remains one of the most threatening diseases, which kills millions of lives every
year. As a promising perspective for cancer treatments, anticancer peptides (ACPs) …