Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

Network analyses in systems pharmacology

SI Berger, R Iyengar - Bioinformatics, 2009 - academic.oup.com
Abstract Systems pharmacology is an emerging area of pharmacology which utilizes
network analysis of drug action as one of its approaches. By considering drug actions and …

Molecular networks for the study of TCM pharmacology

J Zhao, P Jiang, W Zhang - Briefings in Bioinformatics, 2010 - academic.oup.com
To target complex, multi-factorial diseases more effectively, there has been an emerging
trend of multi-target drug development based on network biology, as well as an increasing …

[LIBRO][B] Biomolecular networks: methods and applications in systems biology

AY Zomaya, Y Pan - 2009 - books.google.com
Alternative techniques and tools for analyzing biomolecular networks With the recent rapid
advances in molecular biology, high-throughput experimental methods have resulted in …

[LIBRO][B] Algorithms for analysis, inference, and control of Boolean networks

T Akutsu - 2018 - World Scientific
The Boolean network (BN) is a mathematical model of genetic networks and is based on
Boolean functions. Boolean functions are functions on the Boolean domain that consists of …

Predicting enzyme targets for cancer drugs by profiling human metabolic reactions in NCI-60 cell lines

L Li, X Zhou, WK Ching, P Wang - BMC bioinformatics, 2010 - Springer
Background Drugs can influence the whole metabolic system by targeting enzymes which
catalyze metabolic reactions. The existence of interactions between drugs and metabolic …

Network-based strategies can help mono-and poly-pharmacology drug discovery: a systems biology view

H Billur Engin, A Gursoy, R Nussinov… - Current …, 2014 - ingentaconnect.com
The cellular network and its environment govern cell and organism behavior and are
fundamental to the comprehension of function, misfunction and drug discovery. Over the last …

Network output controllability-based method for drug target identification

L Wu, Y Shen, M Li, FX Wu - IEEE transactions on …, 2015 - ieeexplore.ieee.org
Biomolecules do not perform their functions alone, but interactively with one another to form
so called biomolecular networks. It is well known that a complex disease stems from the …

Constrained target controllability of complex networks

WF Guo, SW Zhang, ZG Wei, T Zeng… - Journal of Statistical …, 2017 - iopscience.iop.org
It is of great theoretical interest and practical significance to study how to control a system by
applying perturbations to only a few driver nodes. Recently, a hot topic of modern network …

Two-stage flux balance analysis of metabolic networks for drug target identification

Z Li, RS Wang, XS Zhang - BMC systems biology, 2011 - Springer
Background Efficient identification of drug targets is one of major challenges for drug
discovery and drug development. Traditional approaches to drug target identification include …