A survey of graph neural networks in various learning paradigms: methods, applications, and challenges

L Waikhom, R Patgiri - Artificial Intelligence Review, 2023 - Springer
In the last decade, deep learning has reinvigorated the machine learning field. It has solved
many problems in computer vision, speech recognition, natural language processing, and …

[HTML][HTML] Graph neural networks: A review of methods and applications

J Zhou, G Cui, S Hu, Z Zhang, C Yang, Z Liu, L Wang… - AI open, 2020 - Elsevier
Lots of learning tasks require dealing with graph data which contains rich relation
information among elements. Modeling physics systems, learning molecular fingerprints …

Recipe for a general, powerful, scalable graph transformer

L Rampášek, M Galkin, VP Dwivedi… - Advances in …, 2022 - proceedings.neurips.cc
We propose a recipe on how to build a general, powerful, scalable (GPS) graph Transformer
with linear complexity and state-of-the-art results on a diverse set of benchmarks. Graph …

Long range graph benchmark

VP Dwivedi, L Rampášek, M Galkin… - Advances in …, 2022 - proceedings.neurips.cc
Abstract Graph Neural Networks (GNNs) that are based on the message passing (MP)
paradigm generally exchange information between 1-hop neighbors to build node …

Graph neural networks: foundation, frontiers and applications

L Wu, P Cui, J Pei, L Zhao, X Guo - … of the 28th ACM SIGKDD conference …, 2022 - dl.acm.org
The field of graph neural networks (GNNs) has seen rapid and incredible strides over the
recent years. Graph neural networks, also known as deep learning on graphs, graph …

ROLAND: graph learning framework for dynamic graphs

J You, T Du, J Leskovec - Proceedings of the 28th ACM SIGKDD …, 2022 - dl.acm.org
Graph Neural Networks (GNNs) have been successfully applied to many real-world static
graphs. However, the success of static graphs has not fully translated to dynamic graphs due …

[HTML][HTML] A gentle introduction to graph neural networks

B Sanchez-Lengeling, E Reif, A Pearce, AB Wiltschko - Distill, 2021 - staging.distill.pub
A Gentle Introduction to Graph Neural Networks Distill About Prize Submit A Gentle Introduction
to Graph Neural Networks Neural networks have been adapted to leverage the structure and …

Towards graph foundation models: A survey and beyond

J Liu, C Yang, Z Lu, J Chen, Y Li, M Zhang… - arxiv preprint arxiv …, 2023 - arxiv.org
Foundation models have emerged as critical components in a variety of artificial intelligence
applications, and showcase significant success in natural language processing and several …

Combinatorial optimization and reasoning with graph neural networks

Q Cappart, D Chételat, EB Khalil, A Lodi… - Journal of Machine …, 2023 - jmlr.org
Combinatorial optimization is a well-established area in operations research and computer
science. Until recently, its methods have focused on solving problem instances in isolation …

Derivation of prognostic contextual histopathological features from whole-slide images of tumours via graph deep learning

Y Lee, JH Park, S Oh, K Shin, J Sun, M Jung… - Nature Biomedical …, 2022 - nature.com
Methods of computational pathology applied to the analysis of whole-slide images (WSIs) do
not typically consider histopathological features from the tumour microenvironment. Here …