[HTML][HTML] Network analysis methods for studying microbial communities: A mini review

MS Matchado, M Lauber, S Reitmeier… - Computational and …, 2021 - Elsevier
Microorganisms including bacteria, fungi, viruses, protists and archaea live as communities
in complex and contiguous environments. They engage in numerous inter-and intra …

Nanochemistry of gold: from surface engineering to dental healthcare applications

S Zhang, N Kong, Z Wang, Y Zhang, C Ni, L Li… - Chemical Society …, 2024 - pubs.rsc.org
Advancements in nanochemistry have led to the development of engineered gold
nanostructures (GNSs) with remarkable potential for a variety of dental healthcare …

Multi-kingdom microbiota analyses identify bacterial–fungal interactions and biomarkers of colorectal cancer across cohorts

NN Liu, N Jiao, JC Tan, Z Wang, D Wu, AJ Wang… - Nature …, 2022 - nature.com
Despite recent progress in our understanding of the association between the gut
microbiome and colorectal cancer (CRC), multi-kingdom gut microbiome dysbiosis in CRC …

NetCoMi: network construction and comparison for microbiome data in R

S Peschel, CL Müller, E Von Mutius… - Briefings in …, 2021 - academic.oup.com
Motivation Estimating microbial association networks from high-throughput sequencing data
is a common exploratory data analysis approach aiming at understanding the complex …

High-yield porphyrin production through metabolic engineering and biocatalysis

H Chen, Y Wang, W Wang, T Cao, L Zhang… - Nature …, 2024 - nature.com
Porphyrins and their derivatives find extensive applications in medicine, food, energy and
materials. In this study, we produced porphyrin compounds by combining Rhodobacter …

[HTML][HTML] Gut microbiota in pathophysiology, diagnosis, and therapeutics of inflammatory bowel disease

H Pandey, D Jain, DWT Tang, SH Wong… - Intestinal …, 2024 - synapse.koreamed.org
Inflammatory bowel disease (IBD) is a multifactorial disease, which is thought to be an
interplay between genetic, environment, microbiota, and immune-mediated factors …

Colonization with ubiquitous protist Blastocystis ST1 ameliorates DSS-induced colitis and promotes beneficial microbiota and immune outcomes

L Deng, L Wojciech, CW Png, YQD Kioh… - npj Biofilms and …, 2023 - nature.com
Blastocystis is a species complex that exhibits extensive genetic diversity, evidenced by its
classification into several genetically distinct subtypes (ST). Although several studies have …

Pathogenic Bacteria Are the Primary Determinants Sha** PM2.5-Borne Resistomes in the Municipal Food Waste Treatment System

L Zhang, B Wang, Y Su, D Wu, Z Wang… - … Science & Technology, 2023 - ACS Publications
Bioaerosol pollution poses a substantial threat to human health during municipal food waste
(FW) recycling. However, bioaerosol-borne antibiotic-resistant genes (ARGs) have received …

[HTML][HTML] Comparative genomics analysis reveals genetic characteristics and nitrogen fixation profile of Bradyrhizobium

C Zhong, G Hu, C Hu, C Xu, Z Zhang, K Ning - Iscience, 2024 - cell.com
Bradyrhizobium is a genus of nitrogen-fixing bacteria, with some species producing nodules
in leguminous plants. Investigations into Bradyrhizobium have recently revealed its …

Alcohol, the gut microbiome, and liver disease

MH Jew, CL Hsu - Journal of gastroenterology and hepatology, 2023 - Wiley Online Library
The microorganisms inhabiting our gastrointestinal tract are critical for human health.
Chronic heavy alcohol use can modulate the composition and function of the gut microbiota …