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Whole-genome duplication and plant macroevolution
Whole-genome duplication (WGD) is characteristic of almost all fundamental lineages of
land plants. Unfortunately, the timings of WGD events are loosely constrained and …
land plants. Unfortunately, the timings of WGD events are loosely constrained and …
Ancient WGD events as drivers of key innovations in angiosperms
Highlights•Polyploidy or whole-genome duplication (WGD) is a ubiquitous feature of plant
genomes.•Polyploidy is most frequent in angiosperms.•A complex pattern of polyploidy is …
genomes.•Polyploidy is most frequent in angiosperms.•A complex pattern of polyploidy is …
One thousand plant transcriptomes and the phylogenomics of green plants
Nature, 2019 - nature.com
Green plants (Viridiplantae) include around 450,000–500,000 species, of great diversity and
have important roles in terrestrial and aquatic ecosystems. Here, as part of the One …
have important roles in terrestrial and aquatic ecosystems. Here, as part of the One …
Plastid phylogenomic insights into relationships of all flowering plant families
HT Li, Y Luo, L Gan, PF Ma, LM Gao, JB Yang, J Cai… - BMC biology, 2021 - Springer
Background Flowering plants (angiosperms) are dominant components of global terrestrial
ecosystems, but phylogenetic relationships at the familial level and above remain only …
ecosystems, but phylogenetic relationships at the familial level and above remain only …
JCVI: A versatile toolkit for comparative genomics analysis
The life cycle of genome builds spans interlocking pillars of assembly, annotation, and
comparative genomics to drive biological insights. While tools exist to address each pillar …
comparative genomics to drive biological insights. While tools exist to address each pillar …
Genomic evidence for rediploidization and adaptive evolution following the whole-genome triplication
X Feng, Q Chen, W Wu, J Wang, G Li, S Xu… - Nature …, 2024 - nature.com
Abstract Whole-genome duplication (WGD), or polyploidy, events are widespread and
significant in the evolutionary history of angiosperms. However, empirical evidence for …
significant in the evolutionary history of angiosperms. However, empirical evidence for …
Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in …
Fabaceae are the third largest angiosperm family, with 765 genera and∼ 19 500 species.
They are important both economically and ecologically, and global Fabaceae crops are …
They are important both economically and ecologically, and global Fabaceae crops are …
Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants
Background The sharp increase of plant genome and transcriptome data provide valuable
resources to investigate evolutionary consequences of gene duplication in a range of taxa …
resources to investigate evolutionary consequences of gene duplication in a range of taxa …
Genetic contribution of paleopolyploidy to adaptive evolution in angiosperms
Ancient whole-genome duplications (WGDs or polyploidy) are prevalent in plants, and some
WGDs occurred during the timing of severe global environmental changes. It has been …
WGDs occurred during the timing of severe global environmental changes. It has been …
Evolution of Rosaceae fruit types based on nuclear phylogeny in the context of geological times and genome duplication
Fruits are the defining feature of angiosperms, likely have contributed to angiosperm
successes by protecting and dispersing seeds, and provide foods to humans and other …
successes by protecting and dispersing seeds, and provide foods to humans and other …