Whole-genome duplication and plant macroevolution

JW Clark, PCJ Donoghue - Trends in plant science, 2018 - cell.com
Whole-genome duplication (WGD) is characteristic of almost all fundamental lineages of
land plants. Unfortunately, the timings of WGD events are loosely constrained and …

Ancient WGD events as drivers of key innovations in angiosperms

PS Soltis, DE Soltis - Current opinion in plant biology, 2016 - Elsevier
Highlights•Polyploidy or whole-genome duplication (WGD) is a ubiquitous feature of plant
genomes.•Polyploidy is most frequent in angiosperms.•A complex pattern of polyploidy is …

One thousand plant transcriptomes and the phylogenomics of green plants

Nature, 2019 - nature.com
Green plants (Viridiplantae) include around 450,000–500,000 species, of great diversity and
have important roles in terrestrial and aquatic ecosystems. Here, as part of the One …

Plastid phylogenomic insights into relationships of all flowering plant families

HT Li, Y Luo, L Gan, PF Ma, LM Gao, JB Yang, J Cai… - BMC biology, 2021 - Springer
Background Flowering plants (angiosperms) are dominant components of global terrestrial
ecosystems, but phylogenetic relationships at the familial level and above remain only …

JCVI: A versatile toolkit for comparative genomics analysis

H Tang, V Krishnakumar, X Zeng, Z Xu, A Taranto… - Imeta, 2024 - Wiley Online Library
The life cycle of genome builds spans interlocking pillars of assembly, annotation, and
comparative genomics to drive biological insights. While tools exist to address each pillar …

Genomic evidence for rediploidization and adaptive evolution following the whole-genome triplication

X Feng, Q Chen, W Wu, J Wang, G Li, S Xu… - Nature …, 2024 - nature.com
Abstract Whole-genome duplication (WGD), or polyploidy, events are widespread and
significant in the evolutionary history of angiosperms. However, empirical evidence for …

Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in …

Y Zhao, R Zhang, KW Jiang, J Qi, Y Hu, J Guo, R Zhu… - Molecular plant, 2021 - cell.com
Fabaceae are the third largest angiosperm family, with 765 genera and∼ 19 500 species.
They are important both economically and ecologically, and global Fabaceae crops are …

Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

X Qiao, Q Li, H Yin, K Qi, L Li, R Wang, S Zhang… - Genome biology, 2019 - Springer
Background The sharp increase of plant genome and transcriptome data provide valuable
resources to investigate evolutionary consequences of gene duplication in a range of taxa …

Genetic contribution of paleopolyploidy to adaptive evolution in angiosperms

S Wu, B Han, Y Jiao - Molecular plant, 2020 - cell.com
Ancient whole-genome duplications (WGDs or polyploidy) are prevalent in plants, and some
WGDs occurred during the timing of severe global environmental changes. It has been …

Evolution of Rosaceae fruit types based on nuclear phylogeny in the context of geological times and genome duplication

Y **ang, CH Huang, Y Hu, J Wen, S Li… - Molecular biology …, 2017 - academic.oup.com
Fruits are the defining feature of angiosperms, likely have contributed to angiosperm
successes by protecting and dispersing seeds, and provide foods to humans and other …