Genomic Selection in the Era of Next Generation Sequencing for Complex Traits in Plant Breeding

JA Bhat, S Ali, RK Salgotra, ZA Mir, S Dutta… - Frontiers in …, 2016 - frontiersin.org
Genomic selection (GS) is a promising approach exploiting molecular genetic markers to
design novel breeding programs and to develop new markers-based models for genetic …

Development and use of molecular markers: past and present

A Grover, PC Sharma - Critical reviews in biotechnology, 2016 - Taylor & Francis
Molecular markers, due to their stability, cost-effectiveness and ease of use provide an
immensely popular tool for a variety of applications including genome map**, gene …

CuGenDBv2: an updated database for cucurbit genomics

J Yu, S Wu, H Sun, X Wang, X Tang, S Guo… - Nucleic acids …, 2023 - academic.oup.com
The Cucurbitaceae (cucurbit) family consists of about 1,000 species in 95 genera, including
many economically important and popular fruit and vegetable crops. During the past several …

Deriving genotypes from RAD-seq short-read data using Stacks

NC Rochette, JM Catchen - Nature protocols, 2017 - nature.com
Restriction site-associated DNA sequencing (RAD-seq) allows for the genome-wide
discovery and genoty** of single-nucleotide polymorphisms in hundreds of individuals at …

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments

RK Varshney, C Shi, M Thudi, C Mariac… - Nature …, 2017 - nature.com
Pearl millet [Cenchrus americanus (L.) Morrone] is a staple food for more than 90 million
farmers in arid and semi-arid regions of sub-Saharan Africa, India and South Asia. We report …

Improving grain yield, stress resilience and quality of bread wheat using large-scale genomics

P Juliana, J Poland, J Huerta-Espino, S Shrestha… - Nature …, 2019 - nature.com
Bread wheat improvement using genomic tools is essential for accelerating trait genetic
gains. Here we report the genomic predictabilities of 35 key traits and demonstrate the …

Canopy temperature and vegetation indices from high-throughput phenoty** improve accuracy of pedigree and genomic selection for grain yield in wheat

J Rutkoski, J Poland, S Mondal… - G3: Genes …, 2016 - academic.oup.com
Genomic selection can be applied prior to phenoty**, enabling shorter breeding cycles
and greater rates of genetic gain relative to phenotypic selection. Traits measured using …

Genomic Selection and Association Map** in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and …

J Spindel, H Begum, D Akdemir, P Virk, B Collard… - PLoS …, 2015 - journals.plos.org
Genomic Selection (GS) is a new breeding method in which genome-wide markers are used
to predict the breeding value of individuals in a breeding population. GS has been shown to …

LinkImpute: fast and accurate genotype imputation for nonmodel organisms

D Money, K Gardner, Z Migicovsky… - G3: Genes …, 2015 - academic.oup.com
Obtaining genome-wide genotype data from a set of individuals is the first step in many
genomic studies, including genome-wide association and genomic selection. All genoty** …

[HTML][HTML] Karyotype stability and unbiased fractionation in the paleo-allotetraploid Cucurbita genomes

H Sun, S Wu, G Zhang, C Jiao, S Guo, Y Ren, J Zhang… - Molecular plant, 2017 - cell.com
The Cucurbita genus contains several economically important species in the Cucurbitaceae
family. Here, we report high-quality genome sequences of C. maxima and C. moschata and …